Variant report

Variant	rs7100827
Chromosome Location	chr10:119020918-119020919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10377	0.81[AMR][1000 genomes]
rs10886054	0.80[AMR][1000 genomes]
rs14240	0.81[AMR][1000 genomes]
rs2015586	0.81[EUR][1000 genomes]
rs363223	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs363224	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs363225	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs363237	0.81[AMR][1000 genomes]
rs7085415	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095278	0.84[EUR][1000 genomes]
rs7099216	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7100827	SLC18A2	cis	Artery Tibial	GTEx
rs7100827	PDZD8	cis	Artery Aorta	GTEx
rs7100827	SLC18A2	cis	Muscle Skeletal	GTEx
rs7100827	PDZD8	cis	Artery Tibial	GTEx
rs7100827	SLC18A2	cis	Artery Aorta	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:119017400-119034000	Weak transcription	Gastric	stomach
2	chr10:119018400-119023800	Enhancers	Fetal Thymus	thymus
3	chr10:119019000-119021400	Enhancers	Fetal Intestine Large	intestine
4	chr10:119019600-119023000	Enhancers	Ovary	ovary
5	chr10:119019800-119021000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:119019800-119021000	Enhancers	Fetal Intestine Small	intestine
7	chr10:119019800-119023200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:119019800-119031200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:119020000-119021800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:119020000-119034000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:119020000-119042600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:119020200-119021200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:119020400-119021000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:119020600-119024000	Weak transcription	Primary T cells from cord blood	blood
15	chr10:119020600-119024200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:119020600-119028000	Weak transcription	Thymus	Thymus
17	chr10:119020600-119035000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:119020600-119043200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr10:119020600-119045400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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