Variant report

Variant	rs7103351
Chromosome Location	chr11:47636076-47636077
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10769281	0.84[AFR][1000 genomes]
rs10838735	0.88[AFR][1000 genomes]
rs2233354	0.88[AFR][1000 genomes]
rs4256934	0.88[AFR][1000 genomes]
rs4284367	0.88[AFR][1000 genomes]
rs4303193	0.88[AFR][1000 genomes]
rs4331047	0.88[AFR][1000 genomes]
rs4434961	0.88[AFR][1000 genomes]
rs4486587	0.88[AFR][1000 genomes]
rs4623856	0.88[AFR][1000 genomes]
rs6416137	0.81[AFR][1000 genomes]
rs6485760	0.88[AFR][1000 genomes]
rs6485762	0.88[AFR][1000 genomes]
rs7103092	0.88[AFR][1000 genomes]
rs7105845	0.88[AFR][1000 genomes]
rs7109012	0.81[AFR][1000 genomes]
rs7118271	0.88[AFR][1000 genomes]
rs7119578	0.81[AFR][1000 genomes]
rs7941173	0.84[AFR][1000 genomes]
rs7949024	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47617600-47643200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:47618000-47639200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr11:47620800-47637800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:47621000-47640400	Weak transcription	Fetal Brain Female	brain
5	chr11:47621600-47638200	Weak transcription	Hela-S3	cervix
6	chr11:47621600-47647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:47621800-47642000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:47622000-47637600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:47625200-47637800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr11:47626000-47638400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:47626200-47638400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:47626400-47639200	Weak transcription	Colonic Mucosa	Colon
13	chr11:47626600-47639000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:47627800-47643200	Weak transcription	Pancreas	Pancrea
15	chr11:47628600-47638400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:47628600-47638600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:47628800-47642000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:47629200-47638000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:47629400-47638400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:47629400-47639600	Weak transcription	HMEC	breast
21	chr11:47629800-47636600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:47629800-47637800	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr11:47629800-47638600	Weak transcription	Brain Angular Gyrus	brain
24	chr11:47629800-47640800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:47629800-47642400	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:47630000-47638400	Weak transcription	Thymus	Thymus
27	chr11:47630000-47638400	Weak transcription	Osteobl	bone
28	chr11:47630000-47639000	Weak transcription	NHLF	lung
29	chr11:47630000-47639800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr11:47630000-47641200	Weak transcription	Small Intestine	intestine
31	chr11:47630000-47642200	Weak transcription	Fetal Brain Male	brain
32	chr11:47630200-47638400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr11:47630200-47638600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:47630200-47638600	Weak transcription	NH-A	brain
35	chr11:47630200-47639200	Weak transcription	Placenta	Placenta
36	chr11:47630200-47639600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:47630200-47640200	Weak transcription	HSMM	muscle
38	chr11:47630400-47638000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:47630400-47638800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr11:47630400-47648600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr11:47630400-47649600	Weak transcription	Fetal Heart	heart
42	chr11:47631000-47639200	Strong transcription	Fetal Intestine Small	intestine
43	chr11:47631200-47638400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:47631200-47639000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:47631200-47642400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr11:47631400-47639400	Weak transcription	HUVEC	blood vessel
47	chr11:47631400-47640600	Weak transcription	Brain Germinal Matrix	brain
48	chr11:47631800-47638400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr11:47633000-47637000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:47633000-47637400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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