Variant report

Variant	rs71040017
Chromosome Location	chr11:76445325-76445326
allele	lengthTooLong
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76444677..76445883-chr11:76549434..76550433,4	K562	blood:
2	chr11:76445248..76448071-chr11:76628717..76631883,4	MCF-7	breast:
3	chr11:76444321..76446462-chr11:76517342..76520030,2	K562	blood:
4	chr11:76444662..76445640-chr11:76629853..76630608,2	MCF-7	breast:
5	chr11:76444642..76445671-chr11:76509955..76510846,7	K562	blood:
6	chr11:76444797..76445605-chr11:76756797..76757751,2	K562	blood:
7	chr11:76444677..76445621-chr11:76756756..76757566,3	MCF-7	breast:
8	chr11:76443783..76447678-chr11:76493146..76497317,7	MCF-7	breast:
9	chr11:76444583..76446069-chr11:76756756..76757887,9	MCF-7	breast:
10	chr11:76443601..76445826-chr11:76571953..76574772,2	K562	blood:
11	chr11:76445009..76450493-chr11:76452594..76458852,7	K562	blood:
12	chr11:76444941..76447137-chr11:76494986..76497317,3	K562	blood:
13	chr11:76444256..76445576-chr11:76630135..76631218,4	K562	blood:
14	chr11:76444817..76447367-chr11:76477489..76481018,3	MCF-7	breast:
15	chr11:76444941..76446826-chr11:76495647..76497317,2	K562	blood:
16	chr11:76432736..76434565-chr11:76442976..76445333,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000254632	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000255100	Chromatin interaction
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv1850014	chr11:76384895-76464814	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv976471	chr11:76435262-76459660	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv430404	chr11:76436952-76462852	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv2311913	chr11:76445186-76445654	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3487963	chr11:76445193-76445618	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv3487965	chr11:76445219-76445564	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	esv3362524	chr11:76445225-76445574	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv3357137	chr11:76445240-76445564	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv3416375	chr11:76445269-76445512	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv1571596	chr11:76445324-76445459	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	esv3487966	chr11:76445325-76445469	Bivalent Enhancer Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76433400-76456400	Weak transcription	Right Atrium	heart
2	chr11:76441400-76450200	Weak transcription	Liver	Liver
3	chr11:76441600-76445600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:76445000-76446800	Enhancers	K562	blood
5	chr11:76445200-76445400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:76445200-76445400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr11:76445200-76445400	Enhancers	Left Ventricle	heart
8	chr11:76445200-76445600	Enhancers	Fetal Thymus	thymus
9	chr11:76445200-76446200	Enhancers	Fetal Intestine Small	intestine
10	chr11:76445200-76446400	Enhancers	Fetal Muscle Trunk	muscle
11	chr11:76445200-76446600	Enhancers	Colon Smooth Muscle	Colon
12	chr11:76445200-76446800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:76445200-76446800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:76445200-76448000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:76445200-76448800	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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