Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:60049774-60050130	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr11:60049536-60050137	MCF10A-Er-Src	breast:	n/a	chr11:60049607-60049615
3	MYC	chr11:60049802-60050140	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr11:60049706-60050089	MCF10A-Er-Src	breast:	n/a	chr11:60049934-60049946
5	FOS	chr11:60049776-60050045	MCF10A-Er-Src	breast:	n/a	chr11:60049934-60049946
6	STAT3	chr11:60049775-60050114	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr11:60049653-60050016	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr11:60049774-60050100	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr11:60049791-60050068	MCF10A-Er-Src	breast:	n/a	chr11:60049934-60049946
10	MYC	chr11:60049823-60050130	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr11:60049758-60050455	MCF10A-Er-Src	breast:	n/a	chr11:60049934-60049946 chr11:60050325-60050335 chr11:60050326-60050334 chr11:60050325-60050335 chr11:60050325-60050335 chr11:60050325-60050335

Variant related genes	Relation type
MS4A4A	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10750930	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10792261	0.89[ASN][1000 genomes]
rs1365246	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194962	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4644658	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs535413	0.81[JPT][hapmap]
rs56930154	1.00[EUR][1000 genomes]
rs56949580	1.00[EUR][1000 genomes]
rs585540	0.81[JPT][hapmap]
rs587634	0.81[JPT][hapmap]
rs588448	0.81[JPT][hapmap]
rs59016132	1.00[EUR][1000 genomes]
rs60193984	1.00[EUR][1000 genomes]
rs620368	0.81[JPT][hapmap]
rs641829	0.81[JPT][hapmap]
rs6591563	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6591564	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs661376	0.81[JPT][hapmap]
rs662674	0.81[JPT][hapmap]
rs7127750	0.81[ASN][1000 genomes]
rs7930538	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1053558	chr11:59979460-60061209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3435505	chr11:60006972-60051885	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60048000-60052200	Active TSS	Adipose Nuclei	Adipose
2	chr11:60048400-60050200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:60048600-60050200	Active TSS	Fetal Muscle Leg	muscle
4	chr11:60048600-60051000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:60049600-60050600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:60049800-60050600	Active TSS	Placenta	Placenta
7	chr11:60049800-60052000	Enhancers	Monocytes-CD14+_RO01746	blood

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