Variant report

Variant	rs7105505
Chromosome Location	chr11:35296846-35296847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:35295544..35300568-chr11:35411012..35415613,12	MCF-7	breast:
2	chr11:35296393..35299239-chr11:35321484..35323534,3	MCF-7	breast:
3	chr11:35295515..35301483-chr11:35383053..35389477,19	MCF-7	breast:
4	chr11:35296598..35298325-chr11:35342427..35345338,2	MCF-7	breast:
5	chr11:35238261..35241000-chr11:35295906..35298012,2	MCF-7	breast:
6	chr11:35296687..35299158-chr11:35300780..35302460,2	K562	blood:
7	chr11:35295688..35300934-chr11:35309144..35319083,18	MCF-7	breast:
8	chr11:35289687..35293483-chr11:35296744..35298908,3	MCF-7	breast:
9	chr11:35296358..35301253-chr11:35383072..35388147,10	MCF-7	breast:
10	chr11:35295425..35298898-chr11:35346407..35348803,4	MCF-7	breast:
11	chr11:35296807..35297598-chr11:35383959..35384853,2	MCF-7	breast:
12	chr11:35296515..35299652-chr11:35423102..35425675,4	MCF-7	breast:
13	chr11:35295369..35301669-chr11:35315160..35319353,7	MCF-7	breast:
14	chr11:35279012..35286392-chr11:35294737..35300890,10	MCF-7	breast:
15	chr11:35294411..35297300-chr11:35361479..35363731,2	MCF-7	breast:
16	chr11:35296537..35299593-chr11:35342637..35345511,4	MCF-7	breast:
17	chr11:35294659..35299259-chr11:35323739..35329418,10	MCF-7	breast:
18	chr11:35279289..35280837-chr11:35295180..35298029,2	MCF-7	breast:
19	chr11:35286918..35289513-chr11:35295612..35297896,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000026508	Chromatin interaction
ENSG00000110436	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1043101	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10742339	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10742340	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10742341	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10768118	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10768120	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10768121	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10768122	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10768123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10768126	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10836360	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10836361	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10836362	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836363	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10836364	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10836367	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10836369	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11033045	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11033046	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11033048	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11033052	0.85[YRI][hapmap]
rs11524863	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12361171	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12796856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570215	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17378105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088168	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35629461	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3763888	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3794086	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3794089	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3794090	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3794091	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3794098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3794099	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794103	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818275	0.85[YRI][hapmap]
rs3847604	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4755394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4755395	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4756203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756206	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57339940	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6484778	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7102949	0.81[YRI][hapmap]
rs7105690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115246	0.93[YRI][hapmap]
rs7121587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs736374	0.83[EUR][1000 genomes]
rs7946149	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs932633	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs932635	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs957350	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9633870	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35265800-35305800	Weak transcription	HepG2	liver
2	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
3	chr11:35282200-35297000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:35282200-35297000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:35283000-35302000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:35284600-35300800	Weak transcription	Brain Angular Gyrus	brain
7	chr11:35285800-35308800	Weak transcription	Gastric	stomach
8	chr11:35288800-35297000	Weak transcription	Brain Germinal Matrix	brain
9	chr11:35295000-35297000	Weak transcription	Fetal Thymus	thymus
10	chr11:35295000-35298800	Weak transcription	Esophagus	oesophagus
11	chr11:35295200-35298200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:35295200-35298200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:35295400-35297000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:35295400-35298000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:35295400-35298800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr11:35295800-35297200	Enhancers	Duodenum Mucosa	Duodenum
17	chr11:35295800-35297400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:35295800-35298000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr11:35295800-35298200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:35296000-35297000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:35296000-35298800	Enhancers	Stomach Mucosa	stomach
22	chr11:35296000-35299000	Enhancers	HMEC	breast
23	chr11:35296000-35299000	Enhancers	NHEK	skin
24	chr11:35296200-35297000	Enhancers	Stomach Smooth Muscle	stomach
25	chr11:35296200-35297600	Enhancers	Liver	Liver
26	chr11:35296200-35297600	Enhancers	Colon Smooth Muscle	Colon
27	chr11:35296400-35297000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr11:35296400-35297000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr11:35296400-35297000	Enhancers	A549	lung
30	chr11:35296400-35297200	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr11:35296400-35297400	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr11:35296400-35297600	Enhancers	Brain Cingulate Gyrus	brain
33	chr11:35296400-35297800	Enhancers	Brain Anterior Caudate	brain
34	chr11:35296400-35298000	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr11:35296400-35298000	Flanking Active TSS	Hela-S3	cervix
36	chr11:35296400-35298200	Enhancers	Brain Substantia Nigra	brain
37	chr11:35296400-35298600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr11:35296400-35299000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr11:35296600-35297000	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr11:35296600-35297200	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr11:35296600-35297200	Enhancers	Placenta	Placenta
42	chr11:35296600-35297400	Enhancers	Adipose Nuclei	Adipose
43	chr11:35296600-35297600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:35296600-35297600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:35296600-35297600	Enhancers	Brain Hippocampus Middle	brain
46	chr11:35296600-35297600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:35296600-35297600	Enhancers	Fetal Muscle Leg	muscle
48	chr11:35296600-35297600	Enhancers	Fetal Stomach	stomach
49	chr11:35296600-35297600	Enhancers	Left Ventricle	heart
50	chr11:35296600-35297600	Enhancers	HSMMtube	muscle

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