Variant report

Variant	rs7105845
Chromosome Location	chr11:47598189-47598190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47572291..47576392-chr11:47598056..47603377,7	K562	blood:
2	chr11:47597915..47601799-chr11:47868286..47871887,4	K562	blood:
3	chr11:47585423..47588969-chr11:47597747..47604797,13	K562	blood:
4	chr11:47597275..47600063-chr11:47600255..47602444,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149187	Chromatin interaction
ENSG00000123444	Chromatin interaction
ENSG00000213619	Chromatin interaction
ENSG00000030066	Chromatin interaction
ENSG00000110536	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10690121	1.00[AMR][1000 genomes]
rs10769279	1.00[AMR][1000 genomes]
rs10769281	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10769283	1.00[AMR][1000 genomes]
rs10838735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11039309	1.00[AMR][1000 genomes]
rs11039312	1.00[AMR][1000 genomes]
rs2233354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4256934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4284367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4303193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4331047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4418760	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4434961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4486587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4498952	0.82[AFR][1000 genomes]
rs4623856	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752859	1.00[AMR][1000 genomes]
rs6416137	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6485760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6485762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485764	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7103351	0.88[AFR][1000 genomes]
rs7106293	1.00[AMR][1000 genomes]
rs7107473	1.00[AMR][1000 genomes]
rs7109012	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119578	0.91[AFR][1000 genomes]
rs7123107	1.00[EUR][1000 genomes]
rs7129821	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7941173	0.96[AFR][1000 genomes]
rs7949024	1.00[AFR][1000 genomes]
rs963331	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv314	chr11:47561564-47606256	Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv825872	chr11:47565425-47660330	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47588000-47599800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:47588000-47600000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:47588600-47598600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:47588600-47598800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:47588600-47599000	Strong transcription	Fetal Stomach	stomach
6	chr11:47588600-47599200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:47589200-47599000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:47589200-47599000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr11:47589400-47599400	Strong transcription	Fetal Intestine Small	intestine
10	chr11:47589800-47598200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:47589800-47598600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:47589800-47599000	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:47589800-47599000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:47589800-47599200	Strong transcription	Fetal Thymus	thymus
15	chr11:47590000-47599000	Strong transcription	Duodenum Mucosa	Duodenum
16	chr11:47590000-47599400	Strong transcription	Fetal Intestine Large	intestine
17	chr11:47590200-47599200	Strong transcription	Placenta	Placenta
18	chr11:47590400-47599200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:47590600-47598600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:47591000-47598800	Strong transcription	Primary T cells from cord blood	blood
21	chr11:47591000-47599000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr11:47591000-47599000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:47591000-47599200	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr11:47591200-47599000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:47591200-47599000	Strong transcription	Lung	lung
26	chr11:47591200-47599000	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:47591400-47598600	Strong transcription	Thymus	Thymus
28	chr11:47592600-47598600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:47593800-47598800	Strong transcription	Fetal Kidney	kidney
30	chr11:47594800-47598600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:47594800-47599000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:47594800-47599000	Strong transcription	HSMM	muscle
33	chr11:47595000-47598400	Strong transcription	Esophagus	oesophagus
34	chr11:47595000-47598600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:47595000-47599000	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr11:47595200-47598200	Strong transcription	Osteobl	bone
37	chr11:47595200-47598400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:47595200-47598600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:47595200-47598600	Weak transcription	NHDF-Ad	bronchial
40	chr11:47595200-47598800	Strong transcription	Fetal Muscle Trunk	muscle
41	chr11:47595200-47599000	Strong transcription	Fetal Muscle Leg	muscle
42	chr11:47595400-47598600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:47595400-47598600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:47595400-47598600	Weak transcription	Fetal Heart	heart
45	chr11:47595400-47598600	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:47595400-47598800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:47595400-47598800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr11:47595400-47598800	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr11:47595400-47598800	Weak transcription	Left Ventricle	heart
50	chr11:47595400-47598800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links