Variant report

Variant	rs7106184
Chromosome Location	chr11:71050899-71050900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71041687..71044561-chr11:71049018..71051150,2	MCF-7	breast:
2	chr11:71048396..71050924-chr11:71054660..71057608,2	K562	blood:
3	chr11:71042313..71044030-chr11:71049269..71051334,2	MCF-7	breast:
4	chr11:71036748..71038404-chr11:71049363..71052229,2	MCF-7	breast:
5	chr11:71049379..71051906-chr11:71055170..71057391,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11233147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788635	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12794450	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2003249	0.81[AMR][1000 genomes]
rs34247947	0.98[ASN][1000 genomes]
rs3893148	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57938057	0.82[AMR][1000 genomes]
rs7112442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536062	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536063	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73538149	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358414	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7932973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938712	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71048200-71051200	Enhancers	Fetal Stomach	stomach
2	chr11:71048200-71052000	Enhancers	Fetal Lung	lung
3	chr11:71049200-71051400	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr11:71049400-71051400	Enhancers	Fetal Thymus	thymus
5	chr11:71049600-71052000	Enhancers	Fetal Kidney	kidney
6	chr11:71049800-71051000	Enhancers	Brain Angular Gyrus	brain
7	chr11:71050000-71051600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:71050000-71051600	Enhancers	Fetal Intestine Small	intestine
9	chr11:71050200-71051000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr11:71050200-71051000	Enhancers	HSMM	muscle
11	chr11:71050200-71051400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:71050200-71051600	Enhancers	HMEC	breast
13	chr11:71050200-71052000	Enhancers	Fetal Intestine Large	intestine
14	chr11:71050400-71051000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:71050600-71051000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:71050600-71051000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
17	chr11:71050600-71051000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:71050600-71051000	Bivalent Enhancer	Brain Hippocampus Middle	brain
19	chr11:71050600-71051000	Enhancers	Colon Smooth Muscle	Colon
20	chr11:71050600-71051000	Bivalent Enhancer	Osteobl	bone
21	chr11:71050600-71051200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
22	chr11:71050600-71051200	Enhancers	NHEK	skin
23	chr11:71050600-71051400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:71050600-71051600	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr11:71050600-71051600	Enhancers	NHLF	lung
26	chr11:71050600-71052000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:71050600-71054600	Weak transcription	Spleen	Spleen
28	chr11:71050800-71051000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:71050800-71051000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:71050800-71051000	Enhancers	Ovary	ovary
31	chr11:71050800-71051000	Flanking Active TSS	Rectal Smooth Muscle	rectum
32	chr11:71050800-71051400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:71050800-71051800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr11:71050800-71051800	Bivalent Enhancer	Stomach Smooth Muscle	stomach

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