Variant report

Variant	rs7106323
Chromosome Location	chr11:46842841-46842842
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr11:46842699-46842918	ECC-1	luminal epithelium:	n/a	n/a
2	ESR1	chr11:46842597-46842897	ECC-1	luminal epithelium:	n/a	n/a
3	STAT3	chr11:46842668-46842920	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:46842194..46844369-chr11:46847198..46849731,2	K562	blood:
2	chr11:46842194..46845139-chr11:46848231..46850202,2	K562	blood:

Variant related genes	Relation type
CKAP5	TF binding region
ENSG00000175216	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10466476	1.00[CEU][hapmap];0.90[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038987	1.00[CEU][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039012	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607429	1.00[ASN][1000 genomes]
rs11822959	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	0.88[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825434	0.88[CEU][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277006	0.88[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281784	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938534	0.88[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	0.88[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136433	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136434	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136436	1.00[ASN][1000 genomes]
rs3136439	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136443	1.00[ASN][1000 genomes]
rs3136446	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136448	1.00[ASN][1000 genomes]
rs3136467	1.00[ASN][1000 genomes]
rs3136468	1.00[ASN][1000 genomes]
rs3136469	1.00[ASN][1000 genomes]
rs3136472	1.00[ASN][1000 genomes]
rs3136478	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs3136480	1.00[ASN][1000 genomes]
rs3136481	1.00[ASN][1000 genomes]
rs3136482	1.00[ASN][1000 genomes]
rs3136485	0.97[YRI][hapmap];0.82[AFR][1000 genomes]
rs3136489	1.00[ASN][1000 genomes]
rs3136500	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136504	1.00[ASN][1000 genomes]
rs3136521	1.00[ASN][1000 genomes]
rs4128315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4500447	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311746	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5898	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs59197251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882755	1.00[ASN][1000 genomes]
rs61884270	1.00[ASN][1000 genomes]
rs61884294	1.00[ASN][1000 genomes]
rs61884297	1.00[ASN][1000 genomes]
rs61884303	1.00[ASN][1000 genomes]
rs61884304	1.00[ASN][1000 genomes]
rs61884305	1.00[ASN][1000 genomes]
rs61884306	1.00[ASN][1000 genomes]
rs61884307	1.00[ASN][1000 genomes]
rs61896127	1.00[ASN][1000 genomes]
rs61897302	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[ASN][1000 genomes]
rs61899282	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899292	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	0.88[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107703	0.88[CEU][hapmap]
rs7108147	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111760	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	0.88[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112518	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115038	0.88[CEU][hapmap]
rs7115986	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122604	0.83[YRI][hapmap]
rs7123729	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128102	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928445	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667108	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430382	chr11:46743135-46849360	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3335996	chr11:46818751-46843532	Genic enhancers Enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46761400-46845200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:46782600-46847400	Weak transcription	Stomach Mucosa	stomach
3	chr11:46812000-46847600	Weak transcription	Right Ventricle	heart
4	chr11:46814600-46845800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:46815200-46847800	Weak transcription	Gastric	stomach
6	chr11:46816400-46847800	Weak transcription	Spleen	Spleen
7	chr11:46818800-46846800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:46819000-46847400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:46819200-46847600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:46819600-46847600	Weak transcription	Brain Angular Gyrus	brain
11	chr11:46819600-46847800	Weak transcription	Pancreas	Pancrea
12	chr11:46819800-46847400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:46820800-46847600	Weak transcription	Small Intestine	intestine
14	chr11:46821600-46847600	Weak transcription	Psoas Muscle	Psoas
15	chr11:46824200-46847600	Weak transcription	Right Atrium	heart
16	chr11:46828600-46843200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:46828800-46847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:46830400-46847400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:46831200-46847600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr11:46831400-46847400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:46831400-46847800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:46831800-46846800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:46831800-46846800	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:46832000-46847000	Weak transcription	Brain Anterior Caudate	brain
25	chr11:46832000-46848000	Weak transcription	Lung	lung
26	chr11:46832200-46847600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:46832400-46847000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr11:46834600-46847600	Weak transcription	Fetal Intestine Small	intestine
29	chr11:46835400-46847600	Weak transcription	Fetal Intestine Large	intestine
30	chr11:46836000-46843000	Strong transcription	K562	blood
31	chr11:46836400-46847600	Weak transcription	Brain Substantia Nigra	brain
32	chr11:46837600-46843200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:46837600-46847000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:46837600-46847600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:46837600-46847800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr11:46837800-46843200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:46837800-46847000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:46837800-46847400	Weak transcription	Thymus	Thymus
39	chr11:46837800-46847600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:46837800-46847600	Weak transcription	Aorta	Aorta
41	chr11:46837800-46847800	Weak transcription	Esophagus	oesophagus
42	chr11:46837800-46847800	Weak transcription	Fetal Kidney	kidney
43	chr11:46838000-46845200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:46838000-46845800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:46838000-46847000	Weak transcription	NHLF	lung
46	chr11:46838000-46847400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr11:46838000-46847400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:46838000-46847400	Weak transcription	NH-A	brain
49	chr11:46838000-46847600	Weak transcription	Primary B cells from cord blood	blood
50	chr11:46838000-46847600	Weak transcription	Primary B cells from peripheral blood	blood

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