Variant report

Variant	rs7106865
Chromosome Location	chr11:86309252-86309253
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10792865	0.86[JPT][hapmap]
rs11234719	0.89[CHB][hapmap];0.93[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs11234731	0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs12274942	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12282010	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12288119	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17757676	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1938921	0.95[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs1938929	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs1938931	0.96[ASN][1000 genomes]
rs1938932	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs1938935	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2017483	0.96[ASN][1000 genomes]
rs2212340	0.95[ASN][1000 genomes]
rs2212341	0.91[ASN][1000 genomes]
rs4144866	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs4245417	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4245418	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4245419	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4245420	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4245421	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4245422	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4245423	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4245424	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4319536	0.86[JPT][hapmap]
rs4439535	0.96[ASN][1000 genomes]
rs4592448	0.86[JPT][hapmap]
rs4943948	0.88[ASN][1000 genomes]
rs4943949	0.96[ASN][1000 genomes]
rs4944602	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4944603	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4944607	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs4944609	0.96[ASN][1000 genomes]
rs4944611	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs4944612	0.96[ASN][1000 genomes]
rs4944618	0.81[ASN][1000 genomes]
rs496167	0.87[ASN][1000 genomes]
rs647782	0.83[ASN][1000 genomes]
rs656307	0.87[ASN][1000 genomes]
rs6592301	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6592302	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs663543	0.87[ASN][1000 genomes]
rs7105863	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs7115580	0.95[YRI][hapmap];0.96[ASN][1000 genomes]
rs7115594	0.96[ASN][1000 genomes]
rs7115834	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs7120444	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs7123044	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7937853	0.96[ASN][1000 genomes]
rs7941337	0.96[ASN][1000 genomes]
rs7941446	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]
rs7948981	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7951868	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9787905	0.96[ASN][1000 genomes]
rs999472	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv898057	chr11:86306401-86335459	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86300200-86318800	Weak transcription	Esophagus	oesophagus
2	chr11:86307000-86317800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86308400-86317000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:86308800-86309600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr11:86308800-86312400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:86308800-86321600	Weak transcription	Left Ventricle	heart
7	chr11:86309000-86309400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:86309000-86309800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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