Variant report

Variant	rs7107422
Chromosome Location	chr11:72134469-72134470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72133983..72138141-chr11:72138478..72141890,4	K562	blood:
2	chr11:71813241..71815467-chr11:72133642..72136332,2	MCF-7	breast:
3	chr11:72132612..72135031-chr11:72143340..72145172,3	MCF-7	breast:
4	chr11:71934954..71937167-chr11:72134040..72136370,2	MCF-7	breast:
5	chr11:72127826..72130602-chr11:72132748..72136507,3	MCF-7	breast:
6	chr11:72129063..72130649-chr11:72133564..72135940,2	K562	blood:
7	chr11:72131141..72135165-chr11:72135954..72138566,4	K562	blood:

Variant related genes	Relation type
ENSG00000162129	Chromatin interaction
ENSG00000149357	Chromatin interaction
ENSG00000238768	Chromatin interaction
ENSG00000165458	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11235499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1160142	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11821309	0.93[ASN][1000 genomes]
rs11828128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12295464	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17160018	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs17162150	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1864322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57380316	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57402767	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58058345	0.95[EUR][1000 genomes]
rs58515298	0.95[EUR][1000 genomes]
rs58571741	0.95[EUR][1000 genomes]
rs7109307	0.95[EUR][1000 genomes]
rs7109466	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7111173	0.85[EUR][1000 genomes]
rs7118089	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120137	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927430	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7938979	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7940087	0.82[EUR][1000 genomes]
rs7947482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950298	0.82[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	nsv975201	chr11:72133768-72137290	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72106800-72136800	Weak transcription	Esophagus	oesophagus
2	chr11:72106800-72136800	Weak transcription	NHLF	lung
3	chr11:72109600-72137000	Weak transcription	Osteobl	bone
4	chr11:72109800-72139200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:72110000-72134600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:72110600-72139000	Weak transcription	Colonic Mucosa	Colon
7	chr11:72111800-72138400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:72114000-72138000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:72114200-72138600	Weak transcription	Ovary	ovary
10	chr11:72115200-72136600	Weak transcription	Aorta	Aorta
11	chr11:72123400-72136000	Weak transcription	Brain Germinal Matrix	brain
12	chr11:72123400-72136200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:72123400-72136600	Weak transcription	Spleen	Spleen
14	chr11:72123400-72136800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:72123600-72136600	Weak transcription	Fetal Brain Male	brain
16	chr11:72125400-72136200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:72125400-72137400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:72125400-72138800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr11:72125400-72139200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:72125400-72141600	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:72125400-72141800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr11:72125400-72142000	Weak transcription	HSMM	muscle
23	chr11:72125600-72136000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:72125600-72136600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr11:72125800-72135200	Weak transcription	Fetal Stomach	stomach
26	chr11:72125800-72136600	Weak transcription	Fetal Intestine Small	intestine
27	chr11:72125800-72137000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:72125800-72137800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr11:72125800-72138000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr11:72125800-72138200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:72125800-72138800	Weak transcription	Gastric	stomach
32	chr11:72125800-72139200	Weak transcription	NH-A	brain
33	chr11:72125800-72139400	Weak transcription	Fetal Intestine Large	intestine
34	chr11:72125800-72139600	Weak transcription	HSMMtube	muscle
35	chr11:72125800-72144800	Weak transcription	Fetal Kidney	kidney
36	chr11:72126000-72136000	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:72126000-72136600	Weak transcription	Pancreas	Pancrea
38	chr11:72126000-72138400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:72126000-72138400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr11:72128400-72135200	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr11:72129200-72136000	Weak transcription	Right Atrium	heart
42	chr11:72129400-72135400	Weak transcription	Left Ventricle	heart
43	chr11:72129400-72136000	Weak transcription	Adipose Nuclei	Adipose
44	chr11:72129400-72136400	Weak transcription	Fetal Brain Female	brain
45	chr11:72129400-72136600	Weak transcription	Right Ventricle	heart
46	chr11:72129400-72136800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:72129400-72137200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:72129400-72137200	Weak transcription	Lung	lung
49	chr11:72129400-72138600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:72129400-72144800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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