Variant report

Variant	rs7108147
Chromosome Location	chr11:46830847-46830848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46824423..46826594-chr11:46829282..46831781,2	MCF-7	breast:
2	chr11:46828755..46831301-chr11:46844947..46847653,2	K562	blood:
3	chr11:46830314..46832517-chr11:47174781..47176798,2	K562	blood:
4	chr11:46829226..46831857-chr11:46836190..46837895,2	K562	blood:
5	chr11:46829027..46831966-chr11:46832483..46835445,2	K562	blood:

Variant related genes	Relation type
ENSG00000149179	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10466476	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038987	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039012	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607429	1.00[ASN][1000 genomes]
rs11822959	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	0.88[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825434	0.88[CEU][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277006	0.86[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281784	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938534	0.88[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	0.88[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136433	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136434	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136436	1.00[ASN][1000 genomes]
rs3136439	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136443	1.00[ASN][1000 genomes]
rs3136446	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs3136448	1.00[ASN][1000 genomes]
rs3136467	1.00[ASN][1000 genomes]
rs3136468	1.00[ASN][1000 genomes]
rs3136469	1.00[ASN][1000 genomes]
rs3136472	1.00[ASN][1000 genomes]
rs3136478	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs3136480	1.00[ASN][1000 genomes]
rs3136481	1.00[ASN][1000 genomes]
rs3136482	1.00[ASN][1000 genomes]
rs3136485	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs3136489	1.00[ASN][1000 genomes]
rs3136500	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs3136504	1.00[ASN][1000 genomes]
rs3136521	1.00[ASN][1000 genomes]
rs4128315	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4500447	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5898	1.00[CEU][hapmap];0.91[GIH][hapmap];0.92[TSI][hapmap];1.00[ASN][1000 genomes]
rs59197251	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61882755	1.00[ASN][1000 genomes]
rs61884270	1.00[ASN][1000 genomes]
rs61884294	1.00[ASN][1000 genomes]
rs61884297	1.00[ASN][1000 genomes]
rs61884303	1.00[ASN][1000 genomes]
rs61884304	1.00[ASN][1000 genomes]
rs61884305	1.00[ASN][1000 genomes]
rs61884306	1.00[ASN][1000 genomes]
rs61884307	1.00[ASN][1000 genomes]
rs61896127	1.00[ASN][1000 genomes]
rs61897302	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[ASN][1000 genomes]
rs61899282	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899292	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106323	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107703	0.88[CEU][hapmap]
rs7111760	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112518	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115038	0.88[CEU][hapmap]
rs7115986	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122604	0.85[MKK][hapmap];0.83[YRI][hapmap]
rs7123729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128102	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928445	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667108	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430382	chr11:46743135-46849360	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv3335996	chr11:46818751-46843532	Genic enhancers Enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46761400-46840000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:46761400-46845200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:46762600-46841400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:46762800-46835600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr11:46762800-46842400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:46763400-46839600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:46778800-46841200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:46782600-46847400	Weak transcription	Stomach Mucosa	stomach
9	chr11:46788200-46841400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:46788600-46840600	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:46812000-46847600	Weak transcription	Right Ventricle	heart
12	chr11:46813200-46837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:46814600-46845800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:46815200-46847800	Weak transcription	Gastric	stomach
15	chr11:46816400-46847800	Weak transcription	Spleen	Spleen
16	chr11:46817600-46831200	Weak transcription	Lung	lung
17	chr11:46817600-46836800	Weak transcription	Esophagus	oesophagus
18	chr11:46818800-46846800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr11:46819000-46847400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:46819200-46847600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:46819600-46847600	Weak transcription	Brain Angular Gyrus	brain
22	chr11:46819600-46847800	Weak transcription	Pancreas	Pancrea
23	chr11:46819800-46847400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr11:46820000-46837000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr11:46820800-46847600	Weak transcription	Small Intestine	intestine
26	chr11:46821000-46836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:46821000-46837000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:46821600-46847600	Weak transcription	Psoas Muscle	Psoas
29	chr11:46824000-46837200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:46824200-46847600	Weak transcription	Right Atrium	heart
31	chr11:46824800-46841000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr11:46825200-46831200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:46825200-46831400	Weak transcription	Fetal Intestine Small	intestine
34	chr11:46826400-46835200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:46827000-46832600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr11:46827000-46833000	Strong transcription	K562	blood
37	chr11:46827000-46833200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:46827000-46841800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:46827200-46832400	Strong transcription	Fetal Brain Female	brain
40	chr11:46827200-46840200	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:46827400-46832600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:46827400-46835400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:46827400-46840400	Strong transcription	Fetal Thymus	thymus
44	chr11:46827400-46841200	Strong transcription	Hela-S3	cervix
45	chr11:46827600-46831000	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:46827600-46831600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:46827600-46832000	Strong transcription	NH-A	brain
48	chr11:46827600-46832400	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:46827600-46832400	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr11:46827600-46832800	Strong transcription	Primary B cells from cord blood	blood

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