Variant report

Variant	rs7108758
Chromosome Location	chr11:51477655-51477656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11820046	1.00[EUR][1000 genomes]
rs11828486	0.90[EUR][1000 genomes]
rs2201851	0.89[EUR][1000 genomes]
rs2201852	1.00[EUR][1000 genomes]
rs61890358	1.00[EUR][1000 genomes]
rs61890417	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61890653	1.00[AFR][1000 genomes]
rs61891350	1.00[AFR][1000 genomes]
rs61891351	0.85[EUR][1000 genomes]
rs61891352	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs61891353	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs61891393	0.95[EUR][1000 genomes]
rs61891428	1.00[EUR][1000 genomes]
rs61891429	1.00[EUR][1000 genomes]
rs61891430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891431	1.00[EUR][1000 genomes]
rs61891432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61891433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61891434	0.97[EUR][1000 genomes]
rs61891435	1.00[EUR][1000 genomes]
rs61891436	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61891437	0.97[EUR][1000 genomes]
rs61891438	0.97[EUR][1000 genomes]
rs61892962	1.00[EUR][1000 genomes]
rs61917145	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7106969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7109304	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7113205	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7117992	1.00[EUR][1000 genomes]
rs7120716	1.00[EUR][1000 genomes]
rs7121698	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7125291	0.97[EUR][1000 genomes]
rs7128581	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046048	chr11:50637245-51564415	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv897573	chr11:50730482-51538376	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv897574	chr11:50730482-51559259	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv897575	chr11:50730482-51579085	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1053373	chr11:51095992-51564415	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv554427	chr11:51095992-51580203	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv897582	chr11:51127089-51579085	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1046059	chr11:51176562-51564415	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1036886	chr11:51183682-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv554434	chr11:51183814-51593877	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv554440	chr11:51187354-51578097	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	esv2751029	chr11:51192824-51563636	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv1044063	chr11:51192870-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv1051064	chr11:51195051-51500015	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv1036334	chr11:51195051-51551394	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv1045774	chr11:51205141-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv1048401	chr11:51215424-51564415	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
18	nsv1054282	chr11:51228076-51564415	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
19	nsv1040974	chr11:51267021-51564415	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
20	nsv1048850	chr11:51337062-51564415	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
21	esv1849593	chr11:51347668-51483139	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
22	nsv1041340	chr11:51357233-51564415	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
23	nsv554587	chr11:51362490-51581931	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv554588	chr11:51365437-51582380	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
25	nsv554589	chr11:51365437-51593877	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
26	nsv467884	chr11:51372036-51529002	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
27	nsv467885	chr11:51372036-51529002	Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
28	nsv554590	chr11:51372036-51529002	Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
29	nsv554591	chr11:51372036-51591253	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
30	nsv1048422	chr11:51375310-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
31	nsv832151	chr11:51378059-51565349	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
32	nsv971948	chr11:51458657-51484171	Weak transcription Active TSS ZNF genes & repeats	TF binding region lncRNA	4 gene(s)	inside rSNPs	n/a
33	nsv975922	chr11:51466824-51484171	ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a
34	esv3376966	chr11:51475401-51478424	ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a
35	esv3354935	chr11:51475526-51478124	ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:51477200-51477800	ZNF genes & repeats	Adipose Nuclei	Adipose

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