Variant report

Variant	rs7108822
Chromosome Location	chr11:47044355-47044356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47041841..47045384-chr11:47049919..47053840,3	K562	blood:
2	chr11:46941107..46942004-chr11:47044229..47044846,2	K562	blood:
3	chr11:47043884..47045816-chr11:47048717..47051419,2	K562	blood:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10501319	0.91[CEU][hapmap];0.88[ASN][1000 genomes]
rs10742797	0.83[CEU][hapmap]
rs10769225	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10769226	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10769227	1.00[CEU][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10769228	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10769248	0.80[ASN][1000 genomes]
rs10838635	0.91[CEU][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838640	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10838641	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838644	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838646	1.00[CEU][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10838652	1.00[CEU][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838658	0.92[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10838662	0.91[CEU][hapmap];0.88[ASN][1000 genomes]
rs10838663	0.87[ASN][1000 genomes]
rs10838664	0.91[CEU][hapmap];0.87[ASN][1000 genomes]
rs11039028	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11039033	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11039035	0.87[ASN][1000 genomes]
rs11039057	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039080	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11039081	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11600292	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11601798	0.87[YRI][hapmap];0.88[ASN][1000 genomes]
rs11602250	1.00[CEU][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11603373	0.87[ASN][1000 genomes]
rs11608083	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12417519	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12574410	0.87[ASN][1000 genomes]
rs17790204	0.92[ASN][1000 genomes]
rs2087215	1.00[CEU][hapmap];0.90[ASN][1000 genomes]
rs2279438	0.82[CEU][hapmap];0.86[ASN][1000 genomes]
rs2279439	0.91[CEU][hapmap];0.87[ASN][1000 genomes]
rs34340483	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3758667	0.82[CEU][hapmap]
rs3922684	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4269876	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4315028	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4394802	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4494268	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4498951	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4528282	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4548577	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4576779	0.90[ASN][1000 genomes]
rs4581406	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4587689	1.00[CEU][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4752815	1.00[CEU][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4752816	1.00[CEU][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4752951	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4752965	0.87[ASN][1000 genomes]
rs4752969	0.81[CEU][hapmap];0.88[ASN][1000 genomes]
rs61896133	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61896136	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61897844	0.80[ASN][1000 genomes]
rs6485715	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6485716	0.92[ASN][1000 genomes]
rs6485726	1.00[CEU][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7111270	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7112854	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7113108	0.91[AFR][1000 genomes]
rs7114683	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7123632	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124648	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126005	1.00[CEU][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127741	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128193	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7128650	1.00[CEU][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130006	0.91[CEU][hapmap];0.84[ASN][1000 genomes]
rs7130947	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7929688	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7935346	0.83[CEU][hapmap];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7937410	0.91[CEU][hapmap];0.87[ASN][1000 genomes]
rs7938169	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7939786	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7940240	0.91[CEU][hapmap];0.87[ASN][1000 genomes]
rs7940441	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs7945558	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7946739	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7950753	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7951979	0.87[ASN][1000 genomes]
rs901747	0.87[ASN][1000 genomes]
rs923324	0.92[CEU][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47027400-47056000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:47027800-47048000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:47041800-47044800	Weak transcription	Hela-S3	cervix
5	chr11:47043000-47046000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:47043000-47050000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:47043200-47047600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:47043200-47049000	Weak transcription	Fetal Lung	lung
9	chr11:47043200-47055200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:47043600-47044600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:47043600-47054800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:47043800-47045600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:47043800-47048800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:47043800-47055800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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