Variant report

Variant	rs7109174
Chromosome Location	chr11:59844803-59844804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFF	chr11:59844745-59844983	HepG2	liver:	n/a	chr11:59844871-59844889
2	MAFK	chr11:59844733-59845045	HepG2	liver:	n/a	chr11:59844876-59844892 chr11:59844874-59844894 chr11:59844873-59844888
3	MAFK	chr11:59844739-59845021	HepG2	liver:	n/a	chr11:59844876-59844892 chr11:59844874-59844894 chr11:59844873-59844888
4	SETDB1	chr11:59844737-59845294	U2OS	brain:	n/a	n/a
5	FOXA1	chr11:59844492-59844882	T-47D	breast:	n/a	n/a
6	FOXA1	chr11:59844530-59844878	T-47D	breast:	n/a	n/a
7	CBX3	chr11:59844751-59845266	K562	blood:	n/a	n/a
8	GATA3	chr11:59844538-59844861	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000255331	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10792255	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10897003	0.83[AMR][1000 genomes]
rs10897006	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10897007	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11821744	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11824940	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11825794	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12221875	0.83[AMR][1000 genomes]
rs12225069	0.81[AMR][1000 genomes]
rs12800461	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12805696	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12806720	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17154511	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17154527	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2298584	0.83[AMR][1000 genomes]
rs35691621	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57170676	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7102260	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7106518	0.83[AMR][1000 genomes]
rs7108307	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7113196	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832173	chr11:59788884-59940560	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59839600-59845400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:59844000-59847600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:59844600-59845200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:59844800-59846400	Enhancers	Monocytes-CD14+_RO01746	blood

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