Variant report

Variant	rs7109466
Chromosome Location	chr11:72114792-72114793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72113346..72115251-chr11:72116984..72119752,2	MCF-7	breast:
2	chr11:72108026..72111129-chr11:72112803..72115357,3	MCF-7	breast:
3	chr11:72113681..72116356-chr11:72118762..72120337,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1160142	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs12295464	0.90[EUR][1000 genomes]
rs17160018	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs17162150	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs1864322	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs57380316	0.97[EUR][1000 genomes]
rs57402767	0.93[EUR][1000 genomes]
rs58058345	0.97[EUR][1000 genomes]
rs58515298	0.97[EUR][1000 genomes]
rs58571741	0.97[EUR][1000 genomes]
rs61889249	0.87[AMR][1000 genomes]
rs7107393	0.87[AMR][1000 genomes]
rs7107422	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7109307	0.97[EUR][1000 genomes]
rs7111173	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114507	0.87[AMR][1000 genomes]
rs7118089	0.92[EUR][1000 genomes]
rs7118697	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs7120137	1.00[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs7129526	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs72954115	1.00[ASN][1000 genomes]
rs7927430	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7936281	0.87[AMR][1000 genomes]
rs7938979	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes]
rs7939212	0.87[EUR][1000 genomes]
rs7940087	0.90[EUR][1000 genomes]
rs7947482	1.00[CEU][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7950298	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv1000322	chr11:72109327-72116806	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv8221	chr11:72114718-72114890	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72090400-72123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:72091600-72119200	Weak transcription	Thymus	Thymus
3	chr11:72099200-72115000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:72099200-72115600	Weak transcription	NHDF-Ad	bronchial
5	chr11:72099200-72122800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:72099600-72125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:72099600-72125000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:72100400-72117400	Weak transcription	HMEC	breast
9	chr11:72103400-72120000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:72103600-72116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:72105000-72122200	Weak transcription	GM12878-XiMat	blood
12	chr11:72105400-72124800	Weak transcription	A549	lung
13	chr11:72106000-72115800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:72106200-72121200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:72106200-72121800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:72106800-72136800	Weak transcription	Esophagus	oesophagus
17	chr11:72106800-72136800	Weak transcription	NHLF	lung
18	chr11:72107000-72120000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:72107000-72121200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:72107200-72119000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:72107200-72119800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:72107200-72122400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:72107400-72122600	Weak transcription	Brain Germinal Matrix	brain
24	chr11:72107600-72117600	Weak transcription	Brain Angular Gyrus	brain
25	chr11:72107600-72117600	Weak transcription	Stomach Mucosa	stomach
26	chr11:72107600-72118200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr11:72107600-72119000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:72107600-72121200	Weak transcription	Brain Substantia Nigra	brain
29	chr11:72107600-72122600	Weak transcription	Colon Smooth Muscle	Colon
30	chr11:72107600-72122800	Weak transcription	Fetal Brain Female	brain
31	chr11:72107600-72122800	Weak transcription	Right Ventricle	heart
32	chr11:72107600-72125000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:72107800-72115600	Weak transcription	Fetal Brain Male	brain
34	chr11:72107800-72122000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr11:72107800-72125000	Weak transcription	Fetal Heart	heart
36	chr11:72108000-72122600	Weak transcription	Fetal Lung	lung
37	chr11:72108600-72123600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:72109600-72121200	Weak transcription	Fetal Kidney	kidney
39	chr11:72109600-72137000	Weak transcription	Osteobl	bone
40	chr11:72109800-72115000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:72109800-72139200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:72110000-72134600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr11:72110600-72139000	Weak transcription	Colonic Mucosa	Colon
44	chr11:72111000-72117000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr11:72111800-72117200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:72111800-72138400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:72112000-72119800	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:72112000-72122200	Weak transcription	Fetal Intestine Large	intestine
49	chr11:72112000-72124800	Weak transcription	HSMMtube	muscle
50	chr11:72112400-72116000	Weak transcription	Fetal Thymus	thymus

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