Variant report

Variant	rs7110151
Chromosome Location	chr11:10260966-10260967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10260654..10262324-chr11:10295566..10297220,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10160763	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10770100	0.89[AFR][1000 genomes]
rs10840377	0.84[ASN][1000 genomes]
rs11042615	1.00[CHB][hapmap]
rs11042632	1.00[CHB][hapmap]
rs11042641	1.00[CHB][hapmap]
rs11042682	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11042683	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs11042685	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1114426	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11600251	1.00[CHB][hapmap]
rs11606561	1.00[CHB][hapmap]
rs12360783	1.00[CHB][hapmap]
rs12362060	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs12417184	1.00[CHB][hapmap]
rs12420122	0.84[ASN][1000 genomes]
rs1372809	0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs1372811	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs1442737	1.00[CHB][hapmap]
rs1442739	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs1470259	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs1470260	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs17359113	1.00[CHB][hapmap]
rs1822291	0.84[ASN][1000 genomes]
rs1822292	1.00[CHB][hapmap]
rs1822293	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs1837978	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1867135	0.84[ASN][1000 genomes]
rs1988724	0.81[AFR][1000 genomes]
rs2083714	0.92[AFR][1000 genomes]
rs2197170	0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs2197171	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2403291	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2403292	1.00[CHB][hapmap]
rs35269701	0.84[ASN][1000 genomes]
rs4258371	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4281477	1.00[CHB][hapmap]
rs4385889	0.84[ASN][1000 genomes]
rs4519084	0.84[ASN][1000 genomes]
rs4534577	0.83[AFR][1000 genomes]
rs4550215	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4553358	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4612801	0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs4643073	0.84[ASN][1000 genomes]
rs4910095	1.00[CHB][hapmap]
rs4910101	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4910102	0.92[ASN][1000 genomes]
rs4910104	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4910109	0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4910110	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910111	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910112	0.84[AFR][1000 genomes]
rs4910114	0.84[AFR][1000 genomes]
rs4910116	0.84[AFR][1000 genomes]
rs55796222	0.84[ASN][1000 genomes]
rs55879783	0.84[AFR][1000 genomes]
rs56035322	0.84[AFR][1000 genomes]
rs56352102	0.84[AFR][1000 genomes]
rs57975523	0.84[AFR][1000 genomes]
rs59090117	0.84[AFR][1000 genomes]
rs59807815	0.83[AFR][1000 genomes]
rs61889814	0.83[AFR][1000 genomes]
rs7112413	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs7117478	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7124401	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419149	0.81[AFR][1000 genomes]
rs7935774	0.84[ASN][1000 genomes]
rs7935934	1.00[CHB][hapmap]
rs7937758	0.89[YRI][hapmap];0.92[AFR][1000 genomes]
rs7938491	1.00[CHB][hapmap]
rs7941511	0.82[AFR][1000 genomes]
rs7947059	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs7948215	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3488360	chr11:10258876-10262474	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv8788	chr11:10258999-10261752	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3488365	chr11:10259326-10262324	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3468731	chr11:10259690-10261558	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3468707	chr11:10259908-10261437	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3468718	chr11:10259917-10261398	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3422966	chr11:10259931-10261408	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3488361	chr11:10259943-10261424	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3488359	chr11:10259960-10261373	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3468696	chr11:10259962-10261388	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3488364	chr11:10259988-10261363	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3488366	chr11:10259989-10261363	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3488362	chr11:10260044-10261318	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3468742	chr11:10260048-10261316	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3488367	chr11:10260048-10261316	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv825765	chr11:10260288-10261367	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10235400-10263400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:10252200-10264200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:10253000-10268200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:10254000-10263400	Weak transcription	Ovary	ovary
5	chr11:10254000-10276200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:10254400-10277400	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:10254600-10265800	Weak transcription	Fetal Lung	lung
8	chr11:10254600-10268800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:10255600-10261600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:10255600-10261600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:10255600-10268400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:10255600-10268400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:10255600-10268400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:10255600-10277200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:10255600-10279000	Weak transcription	Small Intestine	intestine
16	chr11:10255800-10266200	Weak transcription	Osteobl	bone
17	chr11:10255800-10268400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:10255800-10277400	Weak transcription	HSMM	muscle
19	chr11:10256000-10261600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:10256000-10265600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:10256000-10270800	Weak transcription	NH-A	brain
22	chr11:10256200-10262000	Weak transcription	NHDF-Ad	bronchial
23	chr11:10256400-10268400	Weak transcription	NHLF	lung
24	chr11:10256600-10263400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:10256600-10269600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:10256800-10261800	Weak transcription	NHEK	skin
27	chr11:10257200-10261400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:10257800-10261200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:10257800-10266400	Weak transcription	Fetal Stomach	stomach
30	chr11:10257800-10269000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:10258000-10266400	Weak transcription	Fetal Intestine Small	intestine
32	chr11:10258800-10261400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:10259000-10261600	Weak transcription	Hela-S3	cervix
34	chr11:10259000-10263400	Weak transcription	Adipose Nuclei	Adipose
35	chr11:10259000-10266400	Weak transcription	Right Ventricle	heart
36	chr11:10259000-10268400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:10259200-10266400	Weak transcription	Aorta	Aorta
38	chr11:10259200-10280200	Weak transcription	A549	lung
39	chr11:10259400-10268200	Weak transcription	Lung	lung
40	chr11:10260000-10263400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:10260000-10266400	Weak transcription	Gastric	stomach
42	chr11:10260000-10266400	Weak transcription	Left Ventricle	heart
43	chr11:10260000-10267800	Weak transcription	Esophagus	oesophagus
44	chr11:10260200-10264200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:10260200-10266400	Weak transcription	Pancreas	Pancrea

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