Variant report

Variant	rs7110749
Chromosome Location	chr11:56620388-56620389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11228707	0.86[JPT][hapmap]
rs11228713	1.00[JPT][hapmap]
rs1943637	0.90[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs1943638	0.82[ASW][hapmap];0.90[CEU][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.88[TSI][hapmap]
rs55862000	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56316524	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57653051	0.92[ASN][1000 genomes]
rs59496802	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61656851	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7107985	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7110612	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72912543	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72923890	0.89[ASN][1000 genomes]
rs72923892	0.92[ASN][1000 genomes]
rs72924988	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72925000	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048328	chr11:56471984-56649908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv2830406	chr11:56481955-56650124	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv469960	chr11:56605222-56704042	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56614400-56621400	Weak transcription	Stomach Mucosa	stomach
2	chr11:56618800-56626600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:56619400-56620400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:56619400-56620600	Enhancers	HMEC	breast
5	chr11:56619600-56620400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:56619600-56620400	Enhancers	NHEK	skin
7	chr11:56619600-56620600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:56620200-56622600	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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