Variant report

Variant	rs7111087
Chromosome Location	chr11:57090750-57090751
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:57088912-57090839	PFSK-1	brain:	n/a	n/a
2	RCOR1	chr11:57089692-57090764	Hela-S3	cervix:	n/a	n/a
3	MXI1	chr11:57088908-57093652	IMR90	lung:	n/a	chr11:57091416-57091431 chr11:57090118-57090133 chr11:57090120-57090135
4	MAZ	chr11:57088363-57091353	IMR90	lung:	n/a	chr11:57090749-57090760 chr11:57090120-57090129 chr11:57089544-57089554
5	POLR2A	chr11:57090096-57093913	Hela-S3	cervix:	n/a	n/a
6	CUX1	chr11:57090714-57090783	GM12878	blood:	n/a	n/a
7	POLR2A	chr11:57089269-57091198	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr11:57089356-57091231	SK-N-MC	brain:	n/a	n/a
9	ZNF263	chr11:57089625-57090915	HEK293-T-REx	kidney:	n/a	chr11:57090677-57090686 chr11:57089833-57089842 chr11:57090167-57090176
10	MXI1	chr11:57089010-57093760	SK-N-SH	brain:	n/a	chr11:57091416-57091431 chr11:57090118-57090133 chr11:57090120-57090135
11	SMC3	chr11:57089658-57090790	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr11:57088922-57094541	PFSK-1	brain:	n/a	n/a
13	MXI1	chr11:57089941-57090784	Hela-S3	cervix:	n/a	chr11:57090118-57090133 chr11:57090120-57090135
14	POLR2A	chr11:57089539-57093525	IMR90	lung:	n/a	n/a
15	MAX	chr11:57090749-57090887	GM12878	blood:	n/a	chr11:57090749-57090760
16	CTCF	chr11:57090640-57090790	AG09319	gingival:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57090718..57092392-chr11:57160324..57163137,2	K562	blood:

Variant related genes	Relation type
TNKS1BP1	TF binding region
ENSG00000254662	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11228987	0.85[YRI][hapmap]
rs11229005	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv541048	chr11:57076815-57120781	Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57079200-57091400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:57079400-57091400	Weak transcription	Primary B cells from cord blood	blood
3	chr11:57079600-57090800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:57083800-57090800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr11:57083800-57090800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr11:57083800-57091400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:57085000-57091000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:57085400-57091200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr11:57086000-57091000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr11:57086200-57091200	Weak transcription	Primary T cells from cord blood	blood
11	chr11:57088200-57090800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:57088200-57090800	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr11:57088200-57091600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:57088600-57091000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:57088800-57090800	Enhancers	Fetal Intestine Large	intestine
16	chr11:57088800-57091400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr11:57088800-57091800	Flanking Active TSS	Fetal Muscle Trunk	muscle
18	chr11:57088800-57091800	Active TSS	Right Atrium	heart
19	chr11:57088800-57091800	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr11:57089000-57090800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:57089000-57091200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:57089000-57091200	Flanking Active TSS	HSMM	muscle
23	chr11:57089000-57091400	Flanking Active TSS	NH-A	brain
24	chr11:57089000-57091600	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr11:57089200-57090800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:57089200-57091200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:57089200-57091200	Enhancers	Dnd41	blood
28	chr11:57089200-57091400	Enhancers	Spleen	Spleen
29	chr11:57089200-57091600	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr11:57089200-57091600	Flanking Active TSS	Hela-S3	cervix
31	chr11:57089200-57091600	Flanking Active TSS	K562	blood
32	chr11:57089200-57091600	Flanking Active TSS	Osteobl	bone
33	chr11:57089200-57091800	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr11:57089200-57093600	Active TSS	Aorta	Aorta
35	chr11:57089400-57090800	Enhancers	GM12878-XiMat	blood
36	chr11:57089400-57091000	Enhancers	Brain Cingulate Gyrus	brain
37	chr11:57089400-57091200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr11:57089400-57091400	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr11:57089400-57091400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr11:57089400-57091600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:57089400-57091800	Flanking Active TSS	Fetal Muscle Leg	muscle
42	chr11:57089400-57091800	Flanking Active TSS	Placenta	Placenta
43	chr11:57089600-57090800	Weak transcription	Small Intestine	intestine
44	chr11:57089600-57091000	Flanking Active TSS	Fetal Kidney	kidney
45	chr11:57089600-57091200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr11:57089600-57091200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr11:57089600-57091200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr11:57089600-57091400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:57089600-57091400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr11:57089600-57093400	Active TSS	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links