Variant report

Variant	rs7111505
Chromosome Location	chr11:17267926-17267927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10832730	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10832749	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832750	0.81[AFR][1000 genomes]
rs10832752	0.81[AFR][1000 genomes]
rs10832753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832754	0.85[ASN][1000 genomes]
rs10832756	0.80[CHB][hapmap]
rs11024147	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11024153	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs11024186	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11024197	0.81[ASN][1000 genomes]
rs11024199	0.85[ASN][1000 genomes]
rs11024201	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs11024215	0.96[ASN][1000 genomes]
rs11024218	0.96[ASN][1000 genomes]
rs11024223	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11024226	0.88[ASN][1000 genomes]
rs11024228	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11024231	0.81[AFR][1000 genomes]
rs12226898	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs214914	0.83[YRI][hapmap]
rs214927	0.83[YRI][hapmap]
rs4508187	0.82[AFR][1000 genomes]
rs603618	0.81[YRI][hapmap]
rs61555995	0.85[ASN][1000 genomes]
rs68175505	0.96[ASN][1000 genomes]
rs7101938	0.91[ASN][1000 genomes]
rs7108315	0.85[AFR][1000 genomes]
rs7108316	0.85[AFR][1000 genomes]
rs7127347	0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7128822	0.82[AFR][1000 genomes]
rs7929047	0.96[CHB][hapmap];0.86[JPT][hapmap]
rs7940253	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17267000-17278800	Weak transcription	Primary T cells from cord blood	blood

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