Variant report

Variant	rs7112518
Chromosome Location	chr11:46919895-46919896
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10466476	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10466477	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838634	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038985	1.00[ASN][1000 genomes]
rs11038987	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039012	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11039015	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607429	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822959	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824327	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825434	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12273360	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12277006	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281784	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12287376	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294921	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938534	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17787930	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867206	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136433	1.00[ASN][1000 genomes]
rs3136434	1.00[ASN][1000 genomes]
rs3136436	1.00[ASN][1000 genomes]
rs3136439	1.00[ASN][1000 genomes]
rs3136443	1.00[ASN][1000 genomes]
rs3136446	1.00[ASN][1000 genomes]
rs3136448	1.00[ASN][1000 genomes]
rs3136467	1.00[ASN][1000 genomes]
rs3136468	1.00[ASN][1000 genomes]
rs3136469	1.00[ASN][1000 genomes]
rs3136472	1.00[ASN][1000 genomes]
rs3136480	1.00[ASN][1000 genomes]
rs3136481	1.00[ASN][1000 genomes]
rs3136482	1.00[ASN][1000 genomes]
rs3136489	1.00[ASN][1000 genomes]
rs3136500	1.00[ASN][1000 genomes]
rs3136504	1.00[ASN][1000 genomes]
rs3136521	1.00[ASN][1000 genomes]
rs4128315	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4500447	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56311746	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56331152	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57368576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57485117	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5898	1.00[ASN][1000 genomes]
rs59197251	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60940896	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61382645	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884294	1.00[ASN][1000 genomes]
rs61884297	1.00[ASN][1000 genomes]
rs61884303	1.00[ASN][1000 genomes]
rs61884304	1.00[ASN][1000 genomes]
rs61884305	1.00[ASN][1000 genomes]
rs61884306	1.00[ASN][1000 genomes]
rs61884307	1.00[ASN][1000 genomes]
rs61896127	1.00[ASN][1000 genomes]
rs61897302	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897303	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897304	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897308	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898529	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61898531	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899280	1.00[ASN][1000 genomes]
rs61899282	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899283	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61899292	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485700	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485706	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102325	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102474	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105052	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105172	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105217	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106323	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7107703	0.86[EUR][1000 genomes]
rs7108147	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111760	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111811	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112060	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115986	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118097	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120113	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123729	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128102	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129622	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73456126	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7928445	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938960	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945548	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947517	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9667108	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9735937	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46878400-46922000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:46886000-46921800	Weak transcription	Hela-S3	cervix
3	chr11:46896600-46928200	Weak transcription	Fetal Heart	heart
4	chr11:46897400-46921800	Weak transcription	HMEC	breast
5	chr11:46898800-46920000	Weak transcription	Stomach Mucosa	stomach
6	chr11:46900800-46923400	Weak transcription	Aorta	Aorta
7	chr11:46905600-46922600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:46907000-46921200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:46911200-46933800	Weak transcription	Fetal Kidney	kidney
10	chr11:46913000-46922800	Strong transcription	Fetal Stomach	stomach
11	chr11:46916000-46923400	Strong transcription	Fetal Lung	lung
12	chr11:46917000-46920000	Weak transcription	Ovary	ovary
13	chr11:46917600-46920200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:46917600-46920800	Weak transcription	NHEK	skin
15	chr11:46917800-46920200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:46917800-46921000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:46917800-46921200	Weak transcription	Liver	Liver
18	chr11:46917800-46934000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:46917800-46934000	Weak transcription	NHLF	lung
20	chr11:46918000-46920000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:46918200-46920000	Weak transcription	Gastric	stomach
22	chr11:46918200-46920200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:46918200-46920200	Weak transcription	Lung	lung
24	chr11:46918200-46920200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:46918200-46920600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:46918200-46920600	Weak transcription	Brain Angular Gyrus	brain
27	chr11:46918200-46924400	Weak transcription	Brain Germinal Matrix	brain
28	chr11:46918200-46925400	Weak transcription	Fetal Brain Male	brain
29	chr11:46918400-46920000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:46918400-46920000	Weak transcription	Fetal Intestine Large	intestine
31	chr11:46918400-46920200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:46918400-46921000	Weak transcription	HepG2	liver
33	chr11:46918400-46925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:46918600-46920000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:46918600-46920000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:46918600-46920000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:46918600-46920000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr11:46918600-46920000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:46918600-46920000	Weak transcription	Esophagus	oesophagus
40	chr11:46918600-46920000	Weak transcription	Placenta	Placenta
41	chr11:46918600-46920000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:46918600-46920200	Weak transcription	Pancreas	Pancrea
43	chr11:46918600-46920400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:46918600-46920800	Weak transcription	Spleen	Spleen
45	chr11:46918600-46924200	Weak transcription	Right Atrium	heart
46	chr11:46918800-46920000	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:46918800-46920000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:46918800-46920000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:46918800-46920000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:46918800-46920000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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