Variant report

Variant	rs7112887
Chromosome Location	chr11:55889815-55889816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:55889797-55889847	CMK	blood:	n/a
2	chr11:55889797-55889847	ECC-1	luminal epithelium:	n/a
3	chr11:55889808-55889858	GM12891	blood:	n/a
4	chr11:55889808-55889858	AG04450	lung:	fetal
5	chr11:55889797-55889847	HepG2	liver:	n/a
6	chr11:55889808-55889858	HCF	heart:	n/a
7	chr11:55889808-55889858	AG10803	skin:	n/a
8	chr11:55889808-55889858	HRCEpiC	kidney:	n/a
9	chr11:55889808-55889858	PFSK-1	brain:	n/a
10	chr11:55889808-55889858	HCPEpiC	choroid plexus:	n/a
11	chr11:55889797-55889847	A549	lung:	n/a
12	chr11:55889808-55889858	AG09309	skin:	n/a
13	chr11:55889797-55889847	NHBE	bronchial:	n/a
14	chr11:55889797-55889847	BJ	skin:	n/a
15	chr11:55889797-55889847	AG09309	skin:	n/a
16	chr11:55889797-55889847	SKMC	muscle:	n/a
17	chr11:55889808-55889858	HUVEC	blood vessel:	n/a
18	chr11:55889797-55889847	HRE	kidney:	n/a
19	chr11:55889808-55889858	GM06990	blood:	n/a
20	chr11:55889797-55889847	HRCEpiC	kidney:	n/a
21	chr11:55889797-55889847	HCPEpiC	choroid plexus:	n/a
22	chr11:55889808-55889858	ECC-1	luminal epithelium:	n/a
23	chr11:55889808-55889858	SK-N-MC	brain:	n/a
24	chr11:55889808-55889858	GM19239	blood:	n/a
25	chr11:55889797-55889847	HAEpiC	amniotic membrane:	n/a
26	chr11:55889808-55889858	AG09319	gingival:	n/a
27	chr11:55889797-55889847	GM12891	blood:	n/a
28	chr11:55889797-55889847	SAEC	small airway:	n/a
29	chr11:55889808-55889858	AG04449	skin:	fetal
30	chr11:55889808-55889858	SAEC	small airway:	n/a
31	chr11:55889797-55889847	NHDF-neo	bronchial:	n/a
32	chr11:55889808-55889858	Hepatocyte	liver:	n/a
33	chr11:55889797-55889847	MCF10A-Er-Src	breast:	n/a
34	chr11:55889808-55889858	BE2_C	brain:	n/a
35	chr11:55889808-55889858	SK-N-SH_RA	brain:	n/a
36	chr11:55889797-55889847	PANC-1	pancreas:	n/a
37	chr11:55889797-55889847	HEEpiC	esophagus:	n/a
38	chr11:55889808-55889858	BJ	skin:	n/a
39	chr11:55889808-55889858	ProgFib	skin:	n/a
40	chr11:55889797-55889847	HUVEC	blood vessel:	n/a
41	chr11:55889808-55889858	CMK	blood:	n/a
42	chr11:55889808-55889858	H1-hESC	embryonic stem cell:	embryo
43	chr11:55889797-55889847	AG04450	lung:	fetal
44	chr11:55889797-55889847	AG10803	skin:	n/a
45	chr11:55889797-55889847	HCF	heart:	n/a
46	chr11:55889797-55889847	HCM	heart:	n/a
47	chr11:55889797-55889847	NT2-D1	testis:	n/a
48	chr11:55889808-55889858	RPTEC	kidney:	n/a
49	chr11:55889808-55889858	GM12878	blood:	n/a
50	chr11:55889797-55889847	ProgFib	skin:	n/a

No data

Variant related genes	Relation type
OR8H3	CpG island

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs17530318	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17530360	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17530416	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17530423	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17603011	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28421520	0.83[EUR][1000 genomes]
rs28537497	0.83[EUR][1000 genomes]
rs28688517	0.83[EUR][1000 genomes]
rs55696205	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56057397	1.00[AFR][1000 genomes]
rs56208265	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56393785	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61746167	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61887074	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887088	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887089	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887090	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887091	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887092	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887137	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61887142	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61887143	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61888282	1.00[AFR][1000 genomes]
rs61888286	1.00[AFR][1000 genomes]
rs61888467	0.84[EUR][1000 genomes]
rs61891189	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61891190	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891191	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891194	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891195	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891196	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61891197	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891198	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891199	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891201	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891202	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891203	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891205	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891206	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891209	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs61891210	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61891211	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7102893	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7109136	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7109807	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7110689	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7114865	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs716103	1.00[AFR][1000 genomes]
rs716104	1.00[AFR][1000 genomes]
rs7943492	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7948567	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	esv2752628	chr11:55682604-55948184	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
9	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv832160	chr11:55780185-55916798	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
11	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1036290	chr11:55807948-55934985	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
13	esv2754280	chr11:55823576-55927591	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
14	esv2752700	chr11:55830265-55896015	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
15	nsv468575	chr11:55847945-55937954	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
16	nsv555095	chr11:55847945-55937954	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
17	esv3410489	chr11:55872880-55890198	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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