Variant report

Variant	rs7113176
Chromosome Location	chr11:55909847-55909848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs11227518	0.90[CEU][hapmap]
rs12099295	0.88[CEU][hapmap]
rs12270268	0.88[CEU][hapmap]
rs17527401	0.90[CEU][hapmap]
rs17527788	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17528782	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17528803	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17530318	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17530360	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17530416	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17530423	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17531417	0.90[CEU][hapmap]
rs17541821	0.90[CEU][hapmap]
rs17541876	0.89[CEU][hapmap]
rs17599457	0.89[CEU][hapmap]
rs17599471	0.90[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap]
rs17599899	0.90[CEU][hapmap];0.83[GIH][hapmap];0.93[TSI][hapmap]
rs17600692	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17600784	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17600820	0.90[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17600939	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17601361	0.90[CEU][hapmap]
rs17601459	0.89[CEU][hapmap]
rs17603011	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17603260	0.90[CEU][hapmap]
rs17610726	0.90[CEU][hapmap]
rs17613345	0.90[CEU][hapmap];1.00[AFR][1000 genomes]
rs1947923	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs2170446	0.90[CEU][hapmap]
rs2449138	0.98[EUR][1000 genomes]
rs2512932	0.98[EUR][1000 genomes]
rs2512961	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs28421520	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28537497	0.92[EUR][1000 genomes]
rs28688517	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2870138	0.90[CEU][hapmap]
rs4338547	0.90[CEU][hapmap]
rs55696205	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55892403	1.00[AFR][1000 genomes]
rs56149224	1.00[AFR][1000 genomes]
rs56208265	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56393785	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61746167	0.92[EUR][1000 genomes]
rs61887074	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61887088	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61887089	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61887090	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61887091	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61887092	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61887137	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61887142	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61887143	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61887243	1.00[AFR][1000 genomes]
rs61888289	1.00[AFR][1000 genomes]
rs61888312	1.00[AFR][1000 genomes]
rs61888313	1.00[AFR][1000 genomes]
rs61888473	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61888545	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61888546	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61889973	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61889974	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61889975	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61891189	0.92[EUR][1000 genomes]
rs61891190	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891191	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891194	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891195	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891196	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61891197	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891198	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891199	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891201	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891202	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891203	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891205	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891206	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891209	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61891210	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61891211	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61903478	1.00[AFR][1000 genomes]
rs7102893	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7104912	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7106248	0.90[CEU][hapmap]
rs7109136	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7109807	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7110317	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7110689	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7113418	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7113601	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7114865	0.92[EUR][1000 genomes]
rs7119253	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7125690	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7128453	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7131505	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7131616	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7936720	0.90[CEU][hapmap]
rs7943492	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7948567	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	esv2752628	chr11:55682604-55948184	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
9	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv832160	chr11:55780185-55916798	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
11	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1036290	chr11:55807948-55934985	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
13	esv2754280	chr11:55823576-55927591	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
14	nsv468575	chr11:55847945-55937954	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
15	nsv555095	chr11:55847945-55937954	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
16	nsv1039279	chr11:55900482-56008437	Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv541045	chr11:55900482-56008437	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
19	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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