Variant report

Variant	rs7114268
Chromosome Location	chr11:55638062-55638063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10400385	0.88[ASN][1000 genomes]
rs11230784	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap]
rs11231723	0.88[ASN][1000 genomes]
rs11827180	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs12098871	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap]
rs12574291	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12575152	0.88[AMR][1000 genomes]
rs12575159	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12575825	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12576374	0.81[ASN][1000 genomes]
rs12577188	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12577454	0.88[ASN][1000 genomes]
rs12577805	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.84[LWK][hapmap];0.90[ASN][1000 genomes]
rs12789462	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12790505	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs12792129	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs12795528	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12797117	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806436	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12808932	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs1384101	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17149110	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2127229	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap]
rs2512721	0.84[ASN][1000 genomes]
rs34111760	0.81[ASN][1000 genomes]
rs34169676	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34196662	0.84[ASN][1000 genomes]
rs34220877	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34285376	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34495977	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34767099	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34770287	0.88[ASN][1000 genomes]
rs35607186	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs35902814	0.88[ASN][1000 genomes]
rs36070669	0.94[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs36080381	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36088468	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4312084	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4367963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]
rs4465383	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4939536	1.00[ASN][1000 genomes]
rs55638992	0.80[EUR][1000 genomes]
rs67425210	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7105199	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7935382	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs7940566	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs7941092	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap]
rs7944439	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[LWK][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap]
rs9667319	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs9667708	0.95[ASN][1000 genomes]
rs9943490	1.00[CEU][hapmap];0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
5	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	esv2759828	chr11:55222420-55638112	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	esv2757445	chr11:55339702-55638112	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
10	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
11	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
12	nsv1044174	chr11:55501796-55862172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
13	nsv832158	chr11:55550160-55701309	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv972028	chr11:55634700-55663452	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:55638000-55640200	Weak transcription	Brain Inferior Temporal Lobe	brain

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