Variant report

Variant	rs711431
Chromosome Location	chr7:105168266-105168267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105165151..105169952-chr7:105171142..105174252,8	MCF-7	breast:
2	chr7:105158727..105165017-chr7:105166972..105176993,56	K562	blood:
3	chr7:105160846..105164326-chr7:105166102..105168555,5	MCF-7	breast:
4	chr7:105165463..105169628-chr7:105170973..105174351,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135249	Chromatin interaction
ENSG00000091127	Chromatin interaction

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs11556986	0.92[EUR][1000 genomes]
rs1355614	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1569134	0.90[EUR][1000 genomes]
rs1706908	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1721498	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17343556	0.90[EUR][1000 genomes]
rs1976969	0.90[EUR][1000 genomes]
rs2392749	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3892297	0.85[EUR][1000 genomes]
rs3892298	0.85[EUR][1000 genomes]
rs4074939	0.87[EUR][1000 genomes]
rs4083246	0.88[EUR][1000 genomes]
rs55691539	0.91[EUR][1000 genomes]
rs55700120	0.90[EUR][1000 genomes]
rs55740553	0.90[EUR][1000 genomes]
rs55794529	0.91[EUR][1000 genomes]
rs55825845	0.80[EUR][1000 genomes]
rs55906043	0.90[EUR][1000 genomes]
rs55922564	0.90[EUR][1000 genomes]
rs55967123	0.91[EUR][1000 genomes]
rs55983796	0.91[EUR][1000 genomes]
rs56055535	0.88[EUR][1000 genomes]
rs56165465	0.93[EUR][1000 genomes]
rs56177071	0.91[EUR][1000 genomes]
rs56230603	0.84[EUR][1000 genomes]
rs56251768	0.91[EUR][1000 genomes]
rs56268110	0.81[EUR][1000 genomes]
rs56379434	0.90[EUR][1000 genomes]
rs68153235	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6943132	0.91[EUR][1000 genomes]
rs6944787	0.90[EUR][1000 genomes]
rs6953851	0.85[EUR][1000 genomes]
rs6955796	0.91[EUR][1000 genomes]
rs6956234	0.90[EUR][1000 genomes]
rs6956249	0.89[EUR][1000 genomes]
rs6957192	0.90[EUR][1000 genomes]
rs6957424	0.91[EUR][1000 genomes]
rs6961233	0.90[EUR][1000 genomes]
rs6961863	0.93[EUR][1000 genomes]
rs6969426	0.90[EUR][1000 genomes]
rs6973263	0.91[EUR][1000 genomes]
rs6973974	0.91[EUR][1000 genomes]
rs6977748	0.90[EUR][1000 genomes]
rs711430	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73190133	0.90[EUR][1000 genomes]
rs73190149	0.90[EUR][1000 genomes]
rs73190151	0.90[EUR][1000 genomes]
rs73190155	0.90[EUR][1000 genomes]
rs73190156	0.90[EUR][1000 genomes]
rs73190158	0.90[EUR][1000 genomes]
rs73190161	0.90[EUR][1000 genomes]
rs73190163	0.90[EUR][1000 genomes]
rs73190166	0.88[EUR][1000 genomes]
rs73190167	0.90[EUR][1000 genomes]
rs73190169	0.90[EUR][1000 genomes]
rs73190172	0.91[EUR][1000 genomes]
rs73190174	0.91[EUR][1000 genomes]
rs73190179	0.88[EUR][1000 genomes]
rs73190181	0.91[EUR][1000 genomes]
rs73190183	0.91[EUR][1000 genomes]
rs73190184	0.90[EUR][1000 genomes]
rs73190186	0.91[EUR][1000 genomes]
rs73190187	0.91[EUR][1000 genomes]
rs73190189	0.91[EUR][1000 genomes]
rs73190193	0.91[EUR][1000 genomes]
rs73190200	0.91[EUR][1000 genomes]
rs73190201	0.91[EUR][1000 genomes]
rs73190202	0.91[EUR][1000 genomes]
rs73192105	0.91[EUR][1000 genomes]
rs73192107	0.91[EUR][1000 genomes]
rs73192115	0.89[EUR][1000 genomes]
rs73192120	0.91[EUR][1000 genomes]
rs73192122	0.91[EUR][1000 genomes]
rs73192124	0.91[EUR][1000 genomes]
rs73192125	0.93[EUR][1000 genomes]
rs73192126	0.91[EUR][1000 genomes]
rs73192134	0.85[EUR][1000 genomes]
rs73192141	0.83[EUR][1000 genomes]
rs73192143	0.85[EUR][1000 genomes]
rs73192144	0.81[EUR][1000 genomes]
rs73192145	0.83[EUR][1000 genomes]
rs73192149	0.80[EUR][1000 genomes]
rs7777343	0.83[EUR][1000 genomes]
rs818619	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs818620	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs818621	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs818628	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9769403	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1023767	chr7:104931143-105190662	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv539049	chr7:104931143-105190662	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv1022065	chr7:104997315-105190662	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv888930	chr7:105012975-105170476	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv888931	chr7:105012975-105173974	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv888932	chr7:105012975-105179756	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv888933	chr7:105012975-105193051	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1023564	chr7:105018484-105182998	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv464668	chr7:105088693-105208492	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv608069	chr7:105088693-105208492	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv888935	chr7:105110990-105193051	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
16	nsv888936	chr7:105119308-105193051	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105163200-105171800	Weak transcription	Thymus	Thymus
2	chr7:105163400-105171600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:105165800-105171800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr7:105165800-105171800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr7:105165800-105171800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:105168000-105171400	Weak transcription	HepG2	liver
7	chr7:105168000-105171800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:105168000-105171800	Weak transcription	A549	lung

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