Variant report

Variant	rs7114383
Chromosome Location	chr11:35356793-35356794
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34930292..34932707-chr11:35355903..35358489,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1042113	0.84[JPT][hapmap]
rs10836373	0.93[EUR][1000 genomes]
rs11033064	0.81[JPT][hapmap]
rs11033071	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11033080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11033083	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11033089	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11033090	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12420201	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12574069	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16927292	0.83[CHB][hapmap]
rs2273687	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2901534	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3794087	0.90[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap];0.81[EUR][1000 genomes]
rs3847612	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3847613	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3847620	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3891872	0.83[CHB][hapmap]
rs3911898	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3925877	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4083481	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4237664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755397	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4755398	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756207	0.83[CHB][hapmap]
rs4756210	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756211	0.95[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4756221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55709010	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55834429	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56028027	0.92[EUR][1000 genomes]
rs6484785	0.90[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72076042	0.90[ASN][1000 genomes]
rs7934047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35339000-35358000	Weak transcription	HepG2	liver
2	chr11:35348400-35358000	Weak transcription	Hela-S3	cervix
3	chr11:35349200-35357000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr11:35350400-35358200	Weak transcription	Placenta	Placenta
5	chr11:35351400-35357200	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:35352800-35361600	Weak transcription	Left Ventricle	heart
7	chr11:35353000-35356800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:35353000-35361600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:35353800-35358400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:35353800-35359000	Weak transcription	K562	blood
11	chr11:35354000-35359200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:35354000-35359800	Weak transcription	Pancreas	Pancrea
13	chr11:35354000-35367800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:35354400-35358000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:35354400-35366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:35354600-35358000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:35354600-35358000	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:35354600-35358800	Weak transcription	Brain Anterior Caudate	brain
19	chr11:35354600-35359000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:35354600-35361600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:35354600-35366000	Weak transcription	Brain Substantia Nigra	brain
22	chr11:35354800-35363200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr11:35355600-35357000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr11:35355600-35357400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:35355600-35357400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:35355800-35357200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:35356000-35356800	Enhancers	HMEC	breast
28	chr11:35356000-35357000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:35356000-35357000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr11:35356000-35357200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:35356000-35357400	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr11:35356000-35357400	Enhancers	NHDF-Ad	bronchial
33	chr11:35356200-35356800	Enhancers	HSMM	muscle
34	chr11:35356200-35357400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr11:35356400-35358200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:35356400-35359000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:35356600-35356800	Enhancers	NHEK	skin
38	chr11:35356600-35356800	Enhancers	NHLF	lung
39	chr11:35356600-35357000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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