Variant report
| Variant | rs7115684 |
|---|---|
| Chromosome Location | chr11:72166165-72166166 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
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(count:2 , 50 per page) page:
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| No data |
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| Variant related genes | Relation type |
|---|---|
| ENSG00000162129 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs2163125 | 0.86[AFR][1000 genomes] |
| rs4943905 | 0.86[AFR][1000 genomes] |
| rs55970551 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs57275811 | 0.86[ASN][1000 genomes] |
| rs60127404 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7122350 | 0.96[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73532651 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73532653 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73532655 | 0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73532669 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7947973 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832206 | chr11:72006573-72176017 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | esv1794740 | chr11:72021720-72332931 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 31 gene(s) | inside rSNPs | diseases |
| 3 | nsv897910 | chr11:72154529-72281884 | Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
