Variant report

Variant	rs7116190
Chromosome Location	chr11:59964992-59964993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10897011	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230180	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230187	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11230194	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11230201	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11601689	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11603507	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11605427	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11826180	0.82[EUR][1000 genomes]
rs12453	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1426250	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1426253	0.81[EUR][1000 genomes]
rs17602572	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1820428	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1820430	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1834549	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1834550	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1834551	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1834557	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2015475	0.81[EUR][1000 genomes]
rs2081545	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081547	0.81[EUR][1000 genomes]
rs2123314	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2278867	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28628869	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28672915	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4492839	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4939320	0.82[EUR][1000 genomes]
rs56189574	0.82[ASN][1000 genomes]
rs56201148	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56273223	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs56357056	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72918674	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72920867	0.80[EUR][1000 genomes]
rs764859	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7926344	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926354	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926729	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926954	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7928895	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7929589	0.82[EUR][1000 genomes]
rs7933202	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7933805	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935829	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7936120	0.81[EUR][1000 genomes]
rs7939882	0.94[EUR][1000 genomes]
rs7946992	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468579	chr11:59814287-59975400	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555150	chr11:59814287-59975400	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59960200-59965000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:59960400-59965400	Enhancers	Dnd41	blood
3	chr11:59961000-59965000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:59962200-59965000	Enhancers	HUVEC	blood vessel
5	chr11:59963800-59965000	Enhancers	Monocytes-CD14+_RO01746	blood

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