Variant report

Variant	rs7117262
Chromosome Location	chr11:17034145-17034146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYBL2	chr11:17034056-17034992	HepG2	liver:	n/a	n/a
2	SP1	chr11:17034067-17035182	A549	lung:	n/a	chr11:17034973-17034987 chr11:17034979-17034993 chr11:17034974-17034983
3	NR3C1	chr11:17034127-17034885	A549	lung:	n/a	chr11:17034529-17034538 chr11:17034530-17034539
4	USF1	chr11:17033714-17034230	H1-hESC	embryonic stem cell:	n/a	n/a
5	NR3C1	chr11:17033959-17035385	A549	lung:	n/a	chr11:17034529-17034538 chr11:17035145-17035159 chr11:17034530-17034539 chr11:17035061-17035074 chr11:17035104-17035117
6	SP1	chr11:17034068-17035238	A549	lung:	n/a	chr11:17034973-17034987 chr11:17034979-17034993 chr11:17034974-17034983
7	USF1	chr11:17033766-17034151	H1-hESC	embryonic stem cell:	n/a	n/a
8	SRF	chr11:17034099-17034897	MCF-7	breast:	n/a	n/a
9	CEBPB	chr11:17034071-17034889	MCF-7	breast:	n/a	chr11:17034449-17034460
10	BCL3	chr11:17034009-17034854	A549	lung:	n/a	n/a
11	FOSL2	chr11:17033803-17035229	A549	lung:	n/a	chr11:17034530-17034538 chr11:17034528-17034540 chr11:17034531-17034542
12	NR3C1	chr11:17034127-17035370	A549	lung:	n/a	chr11:17034529-17034538 chr11:17035145-17035159 chr11:17034530-17034539 chr11:17035061-17035074 chr11:17035104-17035117
13	SIN3AK20	chr11:17034093-17036016	MCF-7	breast:	n/a	n/a
14	CEBPB	chr11:17034064-17035027	A549	lung:	n/a	chr11:17034449-17034460
15	EP300	chr11:17034130-17035262	A549	lung:	n/a	n/a
16	MAX	chr11:17033937-17037316	A549	lung:	n/a	chr11:17035013-17035023 chr11:17035489-17035499 chr11:17034979-17034989
17	TCF12	chr11:17034129-17035564	A549	lung:	n/a	chr11:17035338-17035345
18	NR3C1	chr11:17034070-17034890	A549	lung:	n/a	chr11:17034529-17034538 chr11:17034530-17034539
19	GATA3	chr11:17034112-17035287	A549	lung:	n/a	chr11:17034531-17034540

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17031613..17034437-chr11:17043596..17045738,2	MCF-7	breast:
2	chr11:16995340..16999228-chr11:17033547..17036418,3	MCF-7	breast:

Variant related genes	Relation type
OR7E14P	TF binding region
ENSG00000266493	TF binding region
ENSG00000251928	Chromatin interaction
ENSG00000244398	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10734250	0.92[EUR][1000 genomes]
rs10741719	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741720	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741721	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766370	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832713	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10832715	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10832716	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832717	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832718	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832719	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10832720	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832721	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11605426	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288625	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12365483	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418132	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12808675	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1468489	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34437677	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34502475	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34819854	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35115039	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4351794	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4562807	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756881	0.82[EUR][1000 genomes]
rs4756882	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4756883	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757467	0.82[EUR][1000 genomes]
rs4757479	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4757482	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4757483	0.92[EUR][1000 genomes]
rs4757484	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4757485	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757486	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757489	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757490	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757493	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61881311	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486332	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6486335	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6486336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486337	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486340	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6486341	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486343	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486344	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7101679	0.87[EUR][1000 genomes]
rs71484746	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7481059	0.87[EUR][1000 genomes]
rs7926143	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7928955	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7929923	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7930890	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7931025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7933984	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937479	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7940499	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7947297	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947897	0.84[EUR][1000 genomes]
rs992698	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv825771	chr11:17027229-17048360	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17004800-17034200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:17016400-17034600	Weak transcription	Aorta	Aorta
3	chr11:17019400-17034800	Weak transcription	Lung	lung
4	chr11:17019800-17034600	Weak transcription	Right Ventricle	heart
5	chr11:17021000-17034200	Weak transcription	Colonic Mucosa	Colon
6	chr11:17021200-17034600	Weak transcription	Right Atrium	heart
7	chr11:17022000-17034600	Weak transcription	Brain Angular Gyrus	brain
8	chr11:17030800-17034600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:17032000-17034200	Enhancers	Stomach Mucosa	stomach
10	chr11:17032600-17034200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:17032800-17034200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr11:17032800-17034200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:17032800-17034200	Enhancers	Fetal Intestine Large	intestine
14	chr11:17032800-17034200	Enhancers	Pancreas	Pancrea
15	chr11:17033000-17034200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
16	chr11:17033000-17034600	Weak transcription	Gastric	stomach
17	chr11:17033200-17034600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:17033400-17034200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:17033400-17034600	Flanking Active TSS	A549	lung
20	chr11:17033600-17034200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
21	chr11:17033600-17034200	Enhancers	Esophagus	oesophagus
22	chr11:17033600-17034400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
23	chr11:17033600-17034400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr11:17033600-17034600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:17033600-17034800	Bivalent/Poised TSS	Fetal Kidney	kidney
26	chr11:17033600-17034800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
27	chr11:17033800-17034200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr11:17033800-17034200	Enhancers	Liver	Liver
29	chr11:17033800-17034200	Flanking Active TSS	Brain Anterior Caudate	brain
30	chr11:17033800-17034200	Enhancers	Brain Substantia Nigra	brain
31	chr11:17033800-17034400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
32	chr11:17033800-17034600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:17033800-17034800	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr11:17033800-17034800	Bivalent/Poised TSS	Fetal Stomach	stomach
35	chr11:17034000-17034200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
36	chr11:17034000-17034200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
37	chr11:17034000-17034200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:17034000-17034200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
39	chr11:17034000-17034200	Active TSS	Adipose Nuclei	Adipose
40	chr11:17034000-17034200	Active TSS	Brain Cingulate Gyrus	brain
41	chr11:17034000-17034200	Enhancers	Osteobl	bone
42	chr11:17034000-17034400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
43	chr11:17034000-17034400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:17034000-17034600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:17034000-17034600	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr11:17034000-17034600	Enhancers	Fetal Heart	heart
47	chr11:17034000-17034600	Active TSS	Fetal Intestine Small	intestine
48	chr11:17034000-17034600	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr11:17034000-17034600	Active TSS	Rectal Smooth Muscle	rectum
50	chr11:17034000-17034600	Flanking Active TSS	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links