Variant report

Variant	rs7118307
Chromosome Location	chr11:17005004-17005005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:17004144..17005868-chr11:17008994..17011886,3	MCF-7	breast:
2	chr11:16996626..17000145-chr11:17001852..17005291,4	K562	blood:
3	chr11:17003043..17005299-chr11:17227966..17230584,3	MCF-7	breast:
4	chr11:16997178..16999092-chr11:17003135..17008712,4	MCF-7	breast:
5	chr11:16997842..17006545-chr11:17033236..17037894,15	MCF-7	breast:
6	chr11:16999245..17001608-chr11:17002120..17006650,5	MCF-7	breast:
7	chr11:16964831..16967704-chr11:17003456..17005667,3	MCF-7	breast:
8	chr11:17002569..17005587-chr11:17010572..17013703,3	K562	blood:
9	chr11:17001912..17011357-chr11:17032509..17037700,15	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000011405	Chromatin interaction
ENSG00000184669	Chromatin interaction
ENSG00000166689	Chromatin interaction
ENSG00000070081	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10766366	0.92[EUR][1000 genomes]
rs10766367	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10766368	0.80[ASN][1000 genomes]
rs10832707	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832709	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832710	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832712	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832713	0.82[AFR][1000 genomes]
rs11024101	0.84[ASN][1000 genomes]
rs11024102	0.84[ASN][1000 genomes]
rs11024103	0.97[ASN][1000 genomes]
rs11529141	0.91[EUR][1000 genomes]
rs12575487	0.80[ASN][1000 genomes]
rs1468489	0.82[AFR][1000 genomes]
rs2302207	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2353369	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34927905	0.83[ASN][1000 genomes]
rs4141194	0.82[ASN][1000 genomes]
rs4237715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4237716	0.91[EUR][1000 genomes]
rs4469869	0.91[EUR][1000 genomes]
rs4757468	0.92[EUR][1000 genomes]
rs4757470	0.92[EUR][1000 genomes]
rs4757472	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757473	0.89[EUR][1000 genomes]
rs4757474	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4757475	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4757476	0.91[EUR][1000 genomes]
rs6486332	0.90[AFR][1000 genomes]
rs6486333	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6486334	0.91[AFR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6486335	0.80[AFR][1000 genomes]
rs7122802	0.91[EUR][1000 genomes]
rs7123383	0.83[ASN][1000 genomes]
rs7127818	0.83[ASN][1000 genomes]
rs7930890	0.82[AFR][1000 genomes]
rs7934567	0.91[EUR][1000 genomes]
rs7940499	0.82[AFR][1000 genomes]
rs7944490	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv983149	chr11:17003386-17011615	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16992200-17007400	Weak transcription	Colonic Mucosa	Colon
2	chr11:16998000-17009000	Enhancers	Stomach Mucosa	stomach
3	chr11:16998000-17011800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:16998800-17007800	Genic enhancers	Fetal Intestine Small	intestine
5	chr11:17000600-17011800	Enhancers	Pancreas	Pancrea
6	chr11:17000800-17006200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:17001400-17005200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:17001400-17005200	Enhancers	Brain Angular Gyrus	brain
9	chr11:17001400-17005400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:17001400-17010600	Enhancers	Placenta	Placenta
11	chr11:17001600-17005200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:17001800-17006600	Weak transcription	Liver	Liver
13	chr11:17002000-17006000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:17003000-17009800	Enhancers	Brain Substantia Nigra	brain
15	chr11:17003200-17005400	Enhancers	Gastric	stomach
16	chr11:17003400-17006000	Weak transcription	Esophagus	oesophagus
17	chr11:17003400-17006000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:17003600-17005600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr11:17003600-17007800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:17003600-17009800	Enhancers	Brain Anterior Caudate	brain
21	chr11:17004000-17005400	Enhancers	Brain Hippocampus Middle	brain
22	chr11:17004000-17006400	Enhancers	Brain Cingulate Gyrus	brain
23	chr11:17004000-17007400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:17004000-17007600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr11:17004000-17008000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:17004000-17008200	Weak transcription	Adipose Nuclei	Adipose
27	chr11:17004000-17008200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr11:17004000-17008400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:17004200-17005200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:17004200-17006000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr11:17004200-17007200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr11:17004200-17007200	Weak transcription	Right Ventricle	heart
33	chr11:17004200-17007600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:17004200-17007600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:17004200-17008000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr11:17004200-17008000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:17004200-17011200	Weak transcription	Brain Germinal Matrix	brain
38	chr11:17004400-17006800	Enhancers	HepG2	liver
39	chr11:17004400-17007400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:17004400-17007600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:17004400-17007600	Weak transcription	GM12878-XiMat	blood
42	chr11:17004400-17007800	Weak transcription	Spleen	Spleen
43	chr11:17004600-17005400	Genic enhancers	Fetal Intestine Large	intestine
44	chr11:17004600-17006400	Weak transcription	A549	lung
45	chr11:17004600-17006600	Weak transcription	Left Ventricle	heart
46	chr11:17004600-17007000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr11:17004600-17007600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:17004800-17006000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr11:17004800-17006000	Weak transcription	Fetal Heart	heart
50	chr11:17004800-17006400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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