Variant report

Variant	rs7118918
Chromosome Location	chr11:47540902-47540903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47539127..47541953-chr11:47544239..47547576,3	MCF-7	breast:
2	chr11:47535472..47538181-chr11:47540233..47542499,4	K562	blood:

Variant related genes	Relation type
ENSG00000270072	Chromatin interaction
ENSG00000149187	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10160313	1.00[AFR][1000 genomes]
rs1040199	1.00[AFR][1000 genomes]
rs10769273	1.00[AFR][1000 genomes]
rs2233358	1.00[AFR][1000 genomes]
rs35920762	1.00[AFR][1000 genomes]
rs6485757	1.00[AFR][1000 genomes]
rs7116487	1.00[AFR][1000 genomes]
rs7121406	0.83[AFR][1000 genomes]
rs7932169	1.00[AFR][1000 genomes]
rs7933674	1.00[AFR][1000 genomes]
rs7940413	1.00[AFR][1000 genomes]
rs9666418	1.00[AFR][1000 genomes]
rs967829	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897325	chr11:47411736-47600438	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1036011	chr11:47413060-47582279	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
3	nsv832142	chr11:47517955-47681310	Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47523000-47545600	Weak transcription	Dnd41	blood
2	chr11:47524800-47549600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr11:47528400-47544800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr11:47528800-47541000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:47530200-47543000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr11:47531600-47542000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:47534400-47541400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:47535000-47544600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:47535600-47541200	Enhancers	Lung	lung
10	chr11:47535600-47545200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr11:47535800-47541000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr11:47535800-47541000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:47536000-47542000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr11:47536200-47541600	Enhancers	Left Ventricle	heart
15	chr11:47536800-47542400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr11:47537000-47541000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:47537000-47541000	Enhancers	Adipose Nuclei	Adipose
18	chr11:47537000-47545000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:47537200-47541000	Enhancers	Primary B cells from peripheral blood	blood
20	chr11:47537200-47542400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:47537200-47544800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr11:47537200-47545000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:47537200-47545000	Weak transcription	Esophagus	oesophagus
24	chr11:47537200-47545000	Weak transcription	Pancreas	Pancrea
25	chr11:47537400-47544400	Weak transcription	NH-A	brain
26	chr11:47538000-47543000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr11:47538000-47545000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:47538200-47542400	Enhancers	Right Atrium	heart
29	chr11:47538200-47544800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:47538600-47542600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:47538600-47544400	Weak transcription	HSMM	muscle
32	chr11:47539000-47542400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:47539200-47544200	Enhancers	Rectal Smooth Muscle	rectum
34	chr11:47539400-47541400	Enhancers	Spleen	Spleen
35	chr11:47539400-47542600	Enhancers	Psoas Muscle	Psoas
36	chr11:47539400-47545000	Weak transcription	Gastric	stomach
37	chr11:47539600-47541200	Enhancers	Fetal Thymus	thymus
38	chr11:47539600-47541600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:47539800-47541400	Enhancers	Right Ventricle	heart
40	chr11:47540000-47541000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:47540000-47542400	Enhancers	Fetal Brain Female	brain
42	chr11:47540000-47542600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:47540400-47541200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:47540400-47541200	Weak transcription	NHEK	skin
45	chr11:47540400-47541600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr11:47540400-47541600	Enhancers	Stomach Smooth Muscle	stomach
47	chr11:47540400-47541600	Weak transcription	NHDF-Ad	bronchial
48	chr11:47540400-47541600	Weak transcription	NHLF	lung
49	chr11:47540400-47541600	Weak transcription	Osteobl	bone
50	chr11:47540400-47541800	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links