Variant report

Variant	rs7119361
Chromosome Location	chr11:76573235-76573236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76494290..76496487-chr11:76570623..76573983,3	K562	blood:
2	chr11:76494634..76496487-chr11:76571954..76573983,2	K562	blood:
3	chr11:76518255..76520298-chr11:76572077..76574099,2	MCF-7	breast:
4	chr11:76572033..76573860-chr11:76603838..76606079,2	MCF-7	breast:
5	chr11:76572318..76575156-chr11:76600227..76602502,2	K562	blood:
6	chr11:76478547..76482353-chr11:76570414..76574348,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254632	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 235 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:234)

rs_ID	r²[population]
rs10082568	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1025815	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10431154	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10431181	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10431182	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10736811	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10736812	1.00[CEU][hapmap];0.80[CHD][hapmap];0.94[TSI][hapmap]
rs10751262	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10751263	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10751264	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10751267	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10751268	0.94[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793201	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793204	0.84[ASN][1000 genomes]
rs10793205	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10793206	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10793207	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10793209	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10793211	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10793212	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793213	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793214	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793215	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793216	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10793217	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793218	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10793219	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10793220	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10793221	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10793223	0.94[CEU][hapmap];0.87[JPT][hapmap];0.94[TSI][hapmap]
rs10793227	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs10793229	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs10793230	1.00[CEU][hapmap]
rs10793231	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs10793232	1.00[CEU][hapmap]
rs10899292	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899294	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899295	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899297	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899298	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899301	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899302	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899303	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10899305	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899307	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899308	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899310	1.00[CEU][hapmap];0.94[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899311	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899312	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899313	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899315	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899316	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899320	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10899321	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899325	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899327	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899328	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899329	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899330	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899332	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899333	0.81[AFR][1000 genomes]
rs10899340	1.00[CEU][hapmap]
rs10899341	1.00[CEU][hapmap];0.84[CHD][hapmap];0.94[TSI][hapmap]
rs10899344	0.89[CEU][hapmap]
rs11236977	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236999	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237023	0.85[ASN][1000 genomes]
rs11237025	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11237027	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11237029	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11237031	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11237035	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11533271	0.83[ASN][1000 genomes]
rs11535857	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11537264	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12222825	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12223659	1.00[CEU][hapmap]
rs1225132	0.89[GIH][hapmap]
rs1225140	0.89[GIH][hapmap]
rs12292156	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1235157	0.89[GIH][hapmap]
rs12718490	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12788158	0.91[ASN][1000 genomes]
rs12794575	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796913	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12807735	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1356455	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1356456	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1372045	0.88[CEU][hapmap];0.89[GIH][hapmap];0.80[EUR][1000 genomes]
rs1372046	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1474087	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1517905	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1517906	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1517907	1.00[CEU][hapmap]
rs1517909	1.00[CEU][hapmap]
rs1589126	1.00[CEU][hapmap];0.80[CHD][hapmap];0.91[TSI][hapmap]
rs1607285	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1816748	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1907295	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1914599	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1914600	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1945083	1.00[CEU][hapmap]
rs1965151	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1969315	0.80[AFR][1000 genomes]
rs1973714	0.82[AMR][1000 genomes]
rs1980204	1.00[CEU][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1980205	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1986000	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2043986	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2119455	0.80[EUR][1000 genomes]
rs2119456	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2119457	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2119458	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2156770	1.00[CEU][hapmap]
rs2165404	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2203755	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2372386	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2372388	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2826	1.00[CEU][hapmap];0.80[CHD][hapmap];0.94[TSI][hapmap]
rs3740765	1.00[CEU][hapmap];0.80[CHD][hapmap];0.94[TSI][hapmap]
rs3740767	1.00[CEU][hapmap];0.80[CHD][hapmap];0.94[TSI][hapmap]
rs3781697	1.00[CEU][hapmap]
rs3824889	1.00[CEU][hapmap];0.80[CHD][hapmap];0.94[TSI][hapmap]
rs4145048	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[TSI][hapmap]
rs4367972	0.82[ASN][1000 genomes]
rs4379869	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4457775	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4460836	1.00[CEU][hapmap]
rs4471450	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4479014	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4488228	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4488229	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4556574	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4586198	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4604914	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944128	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944129	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4944132	1.00[CEU][hapmap]
rs4944134	1.00[CEU][hapmap];0.80[CHD][hapmap];0.94[TSI][hapmap]
rs4945115	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4945116	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945118	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945119	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4945124	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945125	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4945129	1.00[CEU][hapmap];0.80[CHD][hapmap];0.94[TSI][hapmap]
rs4945132	1.00[CEU][hapmap]
rs55956901	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56955124	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591043	0.92[ASW][hapmap];0.88[CEU][hapmap];0.83[LWK][hapmap];0.85[TSI][hapmap]
rs603610	0.89[EUR][1000 genomes]
rs6592671	0.88[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592672	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6592675	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592676	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592677	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6592678	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6592679	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6592680	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592682	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6592683	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.85[LWK][hapmap];0.94[TSI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6592684	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6592685	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6592687	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6592691	1.00[CEU][hapmap]
rs7101593	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs7102485	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7103308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7103500	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7105895	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106611	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7106625	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7110532	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.83[LWK][hapmap];0.94[TSI][hapmap];0.81[AFR][1000 genomes]
rs7110849	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7113282	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7113290	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114827	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7115092	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7116513	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7116800	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7116872	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117545	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117682	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7118762	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7120215	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7121273	1.00[CEU][hapmap]
rs7122736	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7123496	1.00[ASW][hapmap];1.00[CEU][hapmap];0.80[CHD][hapmap];0.86[LWK][hapmap];0.94[TSI][hapmap]
rs7123694	1.00[CEU][hapmap]
rs7123723	1.00[CEU][hapmap]
rs7126666	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7127936	1.00[CEU][hapmap]
rs7128770	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7129147	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7924605	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7924613	0.93[CEU][hapmap];0.81[CHD][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7924888	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925135	0.94[CEU][hapmap];0.89[CHB][hapmap];0.82[CHD][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7925652	1.00[CEU][hapmap]
rs7925774	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs7927367	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs7927658	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7927731	1.00[CEU][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes]
rs7929837	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7930307	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7931561	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931646	1.00[CEU][hapmap]
rs7931869	1.00[CEU][hapmap]
rs7931894	0.88[AMR][1000 genomes]
rs7932288	0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933248	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7933351	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7937883	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7940782	1.00[CEU][hapmap]
rs7942574	1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7942646	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7943913	1.00[CEU][hapmap];0.86[CHD][hapmap];0.94[TSI][hapmap]
rs7947809	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7949041	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7951501	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9326485	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs938809	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs938810	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs949339	1.00[CEU][hapmap];0.82[CHD][hapmap];0.94[TSI][hapmap]
rs949340	1.00[CEU][hapmap]
rs963704	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs963705	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs964521	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9666315	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9666322	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9795229	0.82[ASN][1000 genomes]
rs9795281	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9795388	0.83[ASN][1000 genomes]
rs9795398	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7119361	CAPN5	cis	parietal	SCAN
rs7119361	ACER3	cis	cerebellum	SCAN
rs7119361	ACER3	cis	parietal	SCAN
rs7119361	LIPT2	cis	parietal	SCAN
rs7119361	ACER3	cis	lymphoblastoid	seeQTL

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76571400-76573400	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr11:76571600-76573400	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr11:76572400-76573400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:76572400-76573400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr11:76572400-76573400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:76572400-76573400	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr11:76572400-76573400	Flanking Active TSS	Brain Cingulate Gyrus	brain
8	chr11:76572400-76573400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
9	chr11:76572400-76573400	Flanking Active TSS	K562	blood
10	chr11:76572400-76573600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:76572400-76573600	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr11:76572400-76574000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:76572600-76573400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:76572600-76573400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr11:76572600-76573400	Flanking Active TSS	Brain Substantia Nigra	brain
16	chr11:76572600-76573400	Flanking Active TSS	Hela-S3	cervix
17	chr11:76572600-76573600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:76572600-76573600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:76572600-76573600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:76572600-76575200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr11:76572800-76573400	Enhancers	Fetal Intestine Large	intestine
22	chr11:76572800-76573400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr11:76572800-76573400	Flanking Active TSS	A549	lung
24	chr11:76572800-76573400	Flanking Active TSS	NHDF-Ad	bronchial
25	chr11:76572800-76574600	Enhancers	Primary B cells from peripheral blood	blood
26	chr11:76572800-76579600	Weak transcription	Ovary	ovary
27	chr11:76572800-76596400	Weak transcription	Small Intestine	intestine
28	chr11:76573000-76573400	Enhancers	Liver	Liver
29	chr11:76573000-76573400	Enhancers	Brain Germinal Matrix	brain
30	chr11:76573000-76573400	Enhancers	Fetal Brain Female	brain
31	chr11:76573000-76573400	Enhancers	Fetal Heart	heart
32	chr11:76573000-76573400	Active TSS	NHLF	lung
33	chr11:76573000-76573600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr11:76573000-76573600	Enhancers	Left Ventricle	heart
35	chr11:76573000-76573600	Enhancers	Pancreas	Pancrea
36	chr11:76573000-76573600	Active TSS	Right Atrium	heart
37	chr11:76573000-76573600	Flanking Active TSS	NHEK	skin
38	chr11:76573000-76573800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr11:76573000-76574200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr11:76573000-76574800	Enhancers	Primary hematopoietic stem cells	blood
41	chr11:76573000-76575200	Enhancers	Primary B cells from cord blood	blood
42	chr11:76573000-76575200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:76573000-76578200	Weak transcription	Aorta	Aorta
44	chr11:76573000-76578800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:76573000-76579200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr11:76573000-76579400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:76573000-76579600	Weak transcription	Lung	lung
48	chr11:76573000-76579800	Weak transcription	Gastric	stomach
49	chr11:76573000-76581800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr11:76573000-76582000	Weak transcription	HSMM	muscle

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