Variant report

Variant	rs7120323
Chromosome Location	chr11:70828667-70828668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70822460..70824135-chr11:70828496..70831407,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11820146	1.00[AMR][1000 genomes]
rs11820282	1.00[AMR][1000 genomes]
rs11822962	1.00[AMR][1000 genomes]
rs11823338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825011	1.00[AMR][1000 genomes]
rs11826919	1.00[AMR][1000 genomes]
rs11827505	1.00[AMR][1000 genomes]
rs11828049	1.00[AMR][1000 genomes]
rs11828210	1.00[AMR][1000 genomes]
rs2919737	1.00[AMR][1000 genomes]
rs57772484	1.00[AMR][1000 genomes]
rs58224946	1.00[AMR][1000 genomes]
rs59858246	1.00[AMR][1000 genomes]
rs7926203	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7927453	1.00[AMR][1000 genomes]
rs7938379	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70799800-70831000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:70800600-70850800	Weak transcription	Right Atrium	heart
3	chr11:70809400-70835200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:70813800-70830200	Strong transcription	HepG2	liver
5	chr11:70818000-70831600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:70821000-70831400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:70821000-70831600	Weak transcription	Lung	lung
8	chr11:70821000-70842000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:70821200-70835000	Weak transcription	Fetal Kidney	kidney
10	chr11:70822200-70831200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:70824000-70861600	Weak transcription	A549	lung
12	chr11:70824200-70831200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:70824200-70831600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:70824400-70831800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:70824600-70831400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:70825400-70829800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:70825600-70831200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:70826000-70831400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:70827200-70829800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:70827400-70829200	Genic enhancers	Fetal Intestine Small	intestine
21	chr11:70827400-70851200	Weak transcription	Placenta	Placenta
22	chr11:70827600-70829800	Weak transcription	Fetal Stomach	stomach
23	chr11:70827600-70842200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:70827800-70828800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:70827800-70829200	Enhancers	Fetal Intestine Large	intestine
26	chr11:70827800-70831200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:70828000-70831400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr11:70828000-70831400	Weak transcription	Pancreas	Pancrea
29	chr11:70828000-70831600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:70828000-70831600	Weak transcription	Gastric	stomach
31	chr11:70828000-70834000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:70828200-70831400	Weak transcription	HSMM	muscle
33	chr11:70828400-70828800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:70828400-70828800	Enhancers	Liver	Liver
35	chr11:70828600-70828800	Enhancers	Duodenum Mucosa	Duodenum
36	chr11:70828600-70828800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
37	chr11:70828600-70829000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:70828600-70831200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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