Variant report

Variant	rs7121264
Chromosome Location	chr11:47730148-47730149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47663756..47666703-chr11:47730078..47732549,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109919	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11039387	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11819979	0.88[ASN][1000 genomes]
rs11820480	0.91[ASN][1000 genomes]
rs1474056	0.85[ASN][1000 genomes]
rs17791016	1.00[ASN][1000 genomes]
rs1872167	0.86[ASN][1000 genomes]
rs2138767	0.86[ASN][1000 genomes]
rs2305982	0.88[ASN][1000 genomes]
rs2305983	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2869531	0.88[ASN][1000 genomes]
rs2869532	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4303192	0.90[ASN][1000 genomes]
rs4752786	0.86[ASN][1000 genomes]
rs4752791	0.98[ASN][1000 genomes]
rs4752871	0.88[ASN][1000 genomes]
rs4752872	0.88[ASN][1000 genomes]
rs4752877	0.90[ASN][1000 genomes]
rs4752879	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57436966	0.93[ASN][1000 genomes]
rs58357937	0.98[ASN][1000 genomes]
rs59205786	0.94[ASN][1000 genomes]
rs60515486	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485772	0.98[ASN][1000 genomes]
rs6485774	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6485783	0.91[ASN][1000 genomes]
rs6485784	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6485788	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7101582	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7116299	0.84[ASN][1000 genomes]
rs7120737	0.98[ASN][1000 genomes]
rs7124949	0.88[ASN][1000 genomes]
rs7924699	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7927611	0.88[ASN][1000 genomes]
rs7931089	0.85[ASN][1000 genomes]
rs7942031	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7945911	0.88[ASN][1000 genomes]
rs7952204	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469858	chr11:47647515-47837172	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
3	nsv832143	chr11:47700808-47883540	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7121264	FNBP4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47705600-47735600	Weak transcription	Primary B cells from cord blood	blood
2	chr11:47712000-47736000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:47722400-47735800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:47729200-47736000	Weak transcription	Hela-S3	cervix

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