Variant report

Variant	rs7122075
Chromosome Location	chr11:47055600-47055601
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11039039	0.81[AFR][1000 genomes]
rs11039058	0.85[AFR][1000 genomes]
rs12276601	0.82[AFR][1000 genomes]
rs12281521	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289509	0.81[AFR][1000 genomes]
rs12294201	0.81[AFR][1000 genomes]
rs73460061	0.81[AFR][1000 genomes]
rs73460079	0.82[AFR][1000 genomes]
rs7940797	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805201	chr11:46971012-47063429	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv1819852	chr11:46971012-47064542	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv312	chr11:47047247-47072397	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv508627	chr11:47052659-47084007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv33095	chr11:47054281-47064767	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47027400-47056000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:47043800-47055800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:47045800-47056600	Weak transcription	Hela-S3	cervix
5	chr11:47048800-47058000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:47050600-47056000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:47053400-47077600	Weak transcription	Primary T cells from cord blood	blood
8	chr11:47054600-47055600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:47054800-47055600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:47054800-47055600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:47054800-47055600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:47055200-47055600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:47055200-47057600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:47055200-47062000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:47055400-47055600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:47055400-47058200	Weak transcription	NHDF-Ad	bronchial
17	chr11:47055400-47058800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:47055400-47077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:47055600-47077800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links