Variant report

Variant	rs7122176
Chromosome Location	chr11:35303760-35303761
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35303423..35306027-chr11:35316239..35317817,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10671102	1.00[AMR][1000 genomes]
rs12270238	0.88[AFR][1000 genomes]
rs12275544	1.00[AMR][1000 genomes]
rs12276085	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs12281679	1.00[AMR][1000 genomes]
rs2281634	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs3888947	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs57712008	0.84[AFR][1000 genomes]
rs61618750	1.00[AMR][1000 genomes]
rs7131582	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7938147	1.00[AMR][1000 genomes]
rs7938263	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35265800-35305800	Weak transcription	HepG2	liver
2	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
3	chr11:35285800-35308800	Weak transcription	Gastric	stomach
4	chr11:35298000-35317200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:35298200-35303800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:35298200-35326000	Weak transcription	Brain Substantia Nigra	brain
7	chr11:35298600-35303800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr11:35298800-35303800	Weak transcription	Stomach Mucosa	stomach
9	chr11:35298800-35304000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:35298800-35306000	Weak transcription	Brain Anterior Caudate	brain
11	chr11:35299000-35303800	Weak transcription	Hela-S3	cervix
12	chr11:35299000-35308800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:35299000-35326600	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:35299600-35303800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:35299600-35309800	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:35300400-35309800	Strong transcription	Fetal Brain Female	brain
18	chr11:35302200-35304000	Enhancers	Adipose Nuclei	Adipose
19	chr11:35302200-35304200	Enhancers	Left Ventricle	heart
20	chr11:35302200-35304600	Enhancers	Fetal Muscle Leg	muscle
21	chr11:35302200-35304600	Enhancers	Right Atrium	heart
22	chr11:35302200-35304800	Enhancers	NHDF-Ad	bronchial
23	chr11:35302200-35305000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:35302400-35327000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:35302600-35303800	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:35302600-35304800	Enhancers	Muscle Satellite Cultured Cells	--
27	chr11:35302600-35305000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr11:35302600-35309800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:35302600-35329000	Weak transcription	Brain Angular Gyrus	brain
30	chr11:35302800-35304000	Enhancers	Liver	Liver
31	chr11:35302800-35304600	Enhancers	HSMM	muscle
32	chr11:35302800-35304800	Enhancers	NHLF	lung
33	chr11:35303000-35304200	Enhancers	Placenta	Placenta
34	chr11:35303000-35307000	Weak transcription	Brain Germinal Matrix	brain
35	chr11:35303200-35303800	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr11:35303200-35304000	Weak transcription	HSMMtube	muscle
37	chr11:35303200-35304600	Enhancers	Aorta	Aorta
38	chr11:35303200-35304600	Enhancers	Rectal Smooth Muscle	rectum
39	chr11:35303400-35304800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:35303600-35303800	Enhancers	Esophagus	oesophagus
41	chr11:35303600-35303800	Enhancers	K562	blood
42	chr11:35303600-35304000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:35303600-35304400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr11:35303600-35304600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:35303600-35304600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:35303600-35304600	Enhancers	Pancreas	Pancrea
47	chr11:35303600-35304600	Enhancers	Stomach Smooth Muscle	stomach
48	chr11:35303600-35304600	Enhancers	Osteobl	bone
49	chr11:35303600-35304800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:35303600-35304800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links