Variant report

Variant	rs7122512
Chromosome Location	chr11:56674712-56674713
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11603620	0.81[EUR][1000 genomes]
rs12416998	0.83[EUR][1000 genomes]
rs17640885	0.83[EUR][1000 genomes]
rs1938759	0.83[EUR][1000 genomes]
rs1938760	0.83[EUR][1000 genomes]
rs7111113	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7118645	0.83[EUR][1000 genomes]
rs7119402	0.82[EUR][1000 genomes]
rs737368	0.83[EUR][1000 genomes]
rs7947879	0.83[EUR][1000 genomes]
rs947805	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv469960	chr11:56605222-56704042	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1045889	chr11:56624365-56737435	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv520375	chr11:56669830-56704042	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56672400-56675800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:56673600-56677400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr11:56673800-56675000	Flanking Active TSS	NHEK	skin
4	chr11:56674000-56675200	Flanking Active TSS	A549	lung
5	chr11:56674400-56674800	Flanking Active TSS	HMEC	breast
6	chr11:56674400-56675000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:56674600-56675800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:56674600-56676600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:56674600-56677600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:56674600-56677800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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