Variant report

Variant	rs71231886
Chromosome Location	chr8:42895808-42895809
allele	-/GCCT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs13248091	0.87[EUR][1000 genomes]
rs13249741	0.87[EUR][1000 genomes]
rs13252221	0.96[EUR][1000 genomes]
rs13256221	0.89[EUR][1000 genomes]
rs13260731	0.87[EUR][1000 genomes]
rs13269584	0.89[EUR][1000 genomes]
rs13271956	0.89[EUR][1000 genomes]
rs13273189	0.89[EUR][1000 genomes]
rs13273989	0.87[EUR][1000 genomes]
rs13276426	0.87[EUR][1000 genomes]
rs13276821	0.89[EUR][1000 genomes]
rs13281651	0.87[EUR][1000 genomes]
rs13282019	0.87[EUR][1000 genomes]
rs16891667	0.89[EUR][1000 genomes]
rs17622577	0.87[EUR][1000 genomes]
rs17622732	0.87[EUR][1000 genomes]
rs34044853	0.96[EUR][1000 genomes]
rs34143633	0.89[EUR][1000 genomes]
rs34152125	0.87[EUR][1000 genomes]
rs34210297	0.89[EUR][1000 genomes]
rs34242561	0.93[EUR][1000 genomes]
rs34320052	0.87[EUR][1000 genomes]
rs34550994	0.87[EUR][1000 genomes]
rs34582788	0.89[EUR][1000 genomes]
rs34668583	0.83[EUR][1000 genomes]
rs34742882	0.80[EUR][1000 genomes]
rs34920666	0.89[EUR][1000 genomes]
rs35057982	0.85[EUR][1000 genomes]
rs35168459	0.89[EUR][1000 genomes]
rs35316170	0.89[EUR][1000 genomes]
rs35390123	0.94[EUR][1000 genomes]
rs35441746	0.89[EUR][1000 genomes]
rs35491765	0.87[EUR][1000 genomes]
rs35823486	0.89[EUR][1000 genomes]
rs35959188	0.89[EUR][1000 genomes]
rs35970125	0.89[EUR][1000 genomes]
rs36026629	0.87[EUR][1000 genomes]
rs36091568	0.82[EUR][1000 genomes]
rs4524778	0.87[EUR][1000 genomes]
rs62515905	0.85[EUR][1000 genomes]
rs62515908	0.87[EUR][1000 genomes]
rs62515909	0.89[EUR][1000 genomes]
rs62515910	0.89[EUR][1000 genomes]
rs62515912	0.89[EUR][1000 genomes]
rs62515913	0.89[EUR][1000 genomes]
rs62515916	0.87[EUR][1000 genomes]
rs62515917	0.87[EUR][1000 genomes]
rs62515919	0.87[EUR][1000 genomes]
rs62515948	0.87[EUR][1000 genomes]
rs62515952	0.89[EUR][1000 genomes]
rs62517590	0.86[EUR][1000 genomes]
rs62517594	0.89[EUR][1000 genomes]
rs62517595	0.87[EUR][1000 genomes]
rs62517599	0.85[EUR][1000 genomes]
rs62517604	0.87[EUR][1000 genomes]
rs62517605	0.89[EUR][1000 genomes]
rs62517626	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890846	chr8:42625663-43240123	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv1024688	chr8:42709414-43333639	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv539563	chr8:42709414-43333639	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
4	nsv1033927	chr8:42748842-43575771	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv533812	chr8:42755447-43528350	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
6	nsv1032781	chr8:42772394-43461484	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv1021281	chr8:42807619-43472678	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
8	nsv429912	chr8:42852444-43701143	ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
9	nsv869499	chr8:42858608-43541986	Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
10	nsv916847	chr8:42858611-43541984	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
11	nsv1027779	chr8:42863024-43729296	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:42890200-42896200	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr8:42895600-42896000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:42895600-42896000	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr8:42895800-42896000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:42895800-42896200	Active TSS	Placenta	Placenta

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