Variant report

Variant	rs7123238
Chromosome Location	chr11:76448811-76448812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76448481..76450108-chr11:76494249..76496577,2	K562	blood:
2	chr11:76448456..76450010-chr11:76482180..76484132,2	MCF-7	breast:
3	chr11:76446403..76452318-chr11:76452779..76457589,9	K562	blood:
4	chr11:76448672..76451202-chr11:76476087..76478426,2	MCF-7	breast:
5	chr11:76446132..76447728-chr11:76448521..76450951,2	K562	blood:
6	chr11:76445009..76450493-chr11:76452594..76458852,7	K562	blood:
7	chr11:76447864..76450852-chr11:76476429..76482016,6	MCF-7	breast:
8	chr11:76448469..76450791-chr11:76488926..76490777,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000254632	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11822653	0.94[ASN][1000 genomes]
rs11826943	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362105	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12792283	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794131	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12798095	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801851	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12802806	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17812296	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28428842	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34885552	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35714835	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55698208	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55920167	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55933713	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56203693	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56224101	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56274763	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56335423	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57042533	0.96[ASN][1000 genomes]
rs57847352	0.96[ASN][1000 genomes]
rs60543719	0.96[ASN][1000 genomes]
rs61621849	0.96[ASN][1000 genomes]
rs7103917	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7108890	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7122848	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943760	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7944011	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv1850014	chr11:76384895-76464814	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv976471	chr11:76435262-76459660	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv430404	chr11:76436952-76462852	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76433400-76456400	Weak transcription	Right Atrium	heart
2	chr11:76441400-76450200	Weak transcription	Liver	Liver
3	chr11:76445600-76450600	Enhancers	Fetal Heart	heart
4	chr11:76445800-76449200	Enhancers	Fetal Brain Male	brain
5	chr11:76446000-76450400	Enhancers	Fetal Muscle Leg	muscle
6	chr11:76446200-76449000	Weak transcription	Fetal Thymus	thymus
7	chr11:76446400-76463200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:76447000-76449200	Weak transcription	Right Ventricle	heart
9	chr11:76447200-76449200	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:76447200-76450000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:76447400-76458600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:76447600-76449400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:76447800-76449400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:76447800-76449400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr11:76447800-76450400	Enhancers	Spleen	Spleen
16	chr11:76448000-76449400	Enhancers	Adipose Nuclei	Adipose
17	chr11:76448200-76449000	Enhancers	HSMMtube	muscle
18	chr11:76448600-76450400	Enhancers	Placenta	Placenta
19	chr11:76448600-76450400	Enhancers	Stomach Mucosa	stomach
20	chr11:76448600-76451600	Weak transcription	K562	blood
21	chr11:76448800-76449200	Weak transcription	A549	lung
22	chr11:76448800-76454600	Weak transcription	Fetal Intestine Small	intestine
23	chr11:76448800-76456400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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