Variant report

Variant	rs712344
Chromosome Location	chr14:37291650-37291651
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11850405	1.00[MEX][hapmap]
rs17105159	1.00[EUR][1000 genomes]
rs17105856	1.00[EUR][1000 genomes]
rs17105876	1.00[EUR][1000 genomes]
rs17105909	1.00[EUR][1000 genomes]
rs17105921	1.00[EUR][1000 genomes]
rs17105928	1.00[EUR][1000 genomes]
rs17105938	1.00[EUR][1000 genomes]
rs17105941	1.00[EUR][1000 genomes]
rs2065196	1.00[EUR][1000 genomes]
rs57705591	1.00[EUR][1000 genomes]
rs60846053	1.00[EUR][1000 genomes]
rs60910364	1.00[EUR][1000 genomes]
rs698294	0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs712343	1.00[EUR][1000 genomes]
rs712351	1.00[YRI][hapmap]
rs712357	1.00[EUR][1000 genomes]
rs712360	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs712361	1.00[EUR][1000 genomes]
rs73256266	1.00[EUR][1000 genomes]
rs73256270	1.00[EUR][1000 genomes]
rs73256271	1.00[EUR][1000 genomes]
rs73256284	1.00[EUR][1000 genomes]
rs73256290	1.00[EUR][1000 genomes]
rs74044969	1.00[EUR][1000 genomes]
rs848056	1.00[ASW][hapmap];0.93[MKK][hapmap];1.00[EUR][1000 genomes]
rs848059	1.00[YRI][hapmap]
rs848060	1.00[YRI][hapmap]
rs848061	1.00[YRI][hapmap]
rs848062	1.00[YRI][hapmap]
rs848063	1.00[YRI][hapmap]
rs848064	1.00[YRI][hapmap]
rs848065	1.00[YRI][hapmap]
rs848066	1.00[YRI][hapmap]
rs848067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs848069	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs848070	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs848071	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs848078	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs848079	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1047409	chr14:37276300-37356945	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37285400-37291800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:37285600-37292200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:37289200-37291800	Enhancers	HMEC	breast
4	chr14:37289200-37291800	Enhancers	NHEK	skin
5	chr14:37291000-37292000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr14:37291000-37292200	Enhancers	Dnd41	blood
7	chr14:37291200-37292000	Enhancers	Hela-S3	cervix
8	chr14:37291600-37291800	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links