Variant report

Variant	rs7123801
Chromosome Location	chr11:93400052-93400053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93398484..93401369-chr11:93431044..93433387,2	K562	blood:
2	chr11:93399268..93402269-chr11:93471854..93474833,3	K562	blood:
3	chr11:93399268..93402269-chr11:93473059..93476035,6	K562	blood:
4	chr11:93394628..93397183-chr11:93397951..93402212,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166004	Chromatin interaction
ENSG00000166012	Chromatin interaction
ENSG00000182919	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10741468	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10765630	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10765632	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10831087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1939566	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2434983	1.00[EUR][1000 genomes]
rs2508574	1.00[EUR][1000 genomes]
rs4284369	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4595504	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs584474	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs592526	1.00[EUR][1000 genomes]
rs604414	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs607826	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs614003	1.00[EUR][1000 genomes]
rs622231	1.00[EUR][1000 genomes]
rs624883	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6483257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6483263	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs653934	1.00[EUR][1000 genomes]
rs655208	1.00[EUR][1000 genomes]
rs657177	1.00[EUR][1000 genomes]
rs666470	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs669937	1.00[EUR][1000 genomes]
rs683660	1.00[EUR][1000 genomes]
rs694307	1.00[EUR][1000 genomes]
rs7927030	0.92[AFR][1000 genomes]
rs7939434	1.00[EUR][1000 genomes]
rs7940598	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93395400-93404000	Weak transcription	Esophagus	oesophagus
2	chr11:93395400-93406400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:93395400-93406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:93395400-93406800	Weak transcription	Lung	lung
5	chr11:93395400-93412200	Weak transcription	Gastric	stomach
6	chr11:93395400-93412200	Weak transcription	Pancreas	Pancrea
7	chr11:93395400-93417800	Weak transcription	Small Intestine	intestine
8	chr11:93395600-93400400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:93395600-93400400	Weak transcription	Placenta	Placenta
10	chr11:93395600-93400800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:93395600-93401000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr11:93395600-93401200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:93395600-93402200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:93395600-93403800	Weak transcription	Left Ventricle	heart
15	chr11:93395600-93403800	Weak transcription	Ovary	ovary
16	chr11:93395600-93404000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:93395600-93404200	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:93395600-93408200	Weak transcription	Colon Smooth Muscle	Colon
19	chr11:93395600-93411800	Weak transcription	Aorta	Aorta
20	chr11:93395600-93412200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:93395600-93412400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:93395600-93412600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:93395600-93412600	Weak transcription	Colonic Mucosa	Colon
24	chr11:93395600-93417400	Weak transcription	Stomach Mucosa	stomach
25	chr11:93395600-93446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:93395800-93400800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:93395800-93411800	Weak transcription	HSMMtube	muscle
28	chr11:93395800-93412200	Weak transcription	Thymus	Thymus
29	chr11:93395800-93413200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:93395800-93413400	Weak transcription	Right Ventricle	heart
31	chr11:93395800-93415800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:93396000-93400600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr11:93396200-93400400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:93396200-93400600	Weak transcription	Brain Substantia Nigra	brain
35	chr11:93396200-93400800	Weak transcription	NH-A	brain
36	chr11:93396200-93404600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:93396200-93411800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:93396400-93400400	Weak transcription	Primary B cells from peripheral blood	blood
39	chr11:93396400-93400600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr11:93396400-93401200	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:93396400-93401600	Weak transcription	Fetal Brain Female	brain
42	chr11:93396400-93402200	Weak transcription	Primary T cells from cord blood	blood
43	chr11:93396400-93402400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:93396400-93403800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:93396400-93404000	Weak transcription	Fetal Intestine Small	intestine
46	chr11:93396400-93404000	Weak transcription	Fetal Stomach	stomach
47	chr11:93396400-93406400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:93396400-93410400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr11:93396400-93412200	Weak transcription	Brain Angular Gyrus	brain
50	chr11:93396400-93417600	Weak transcription	Fetal Heart	heart

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