Variant report

Variant	rs7124474
Chromosome Location	chr11:56968959-56968960
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10501364	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10896578	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896586	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11228949	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11228951	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11602335	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11605468	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11606597	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12223141	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1815860	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1893677	0.80[EUR][1000 genomes]
rs2156456	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2282623	0.86[CEU][hapmap]
rs542855	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56074283	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56229060	0.81[EUR][1000 genomes]
rs61888863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61888865	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61888866	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs717211	0.94[ASN][1000 genomes]
rs746886	0.86[CEU][hapmap];0.93[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv482317	chr11:56857026-57028631	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7124474	OR9I1	cis	cerebellum	SCAN
rs7124474	OR8H1	cis	parietal	SCAN
rs7124474	MS4A13	cis	cerebellum	SCAN
rs7124474	OR5W2	cis	parietal	SCAN
rs7124474	OR9Q1	cis	parietal	SCAN
rs7124474	OR5J2	cis	cerebellum	SCAN
rs7124474	OR10AG1	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56950200-56969800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:56960000-56969600	Weak transcription	Psoas Muscle	Psoas
3	chr11:56963400-56970600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:56967200-56970000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:56967200-56973000	Enhancers	Fetal Lung	lung
6	chr11:56967400-56973600	Enhancers	Fetal Stomach	stomach
7	chr11:56967800-56973600	Enhancers	Fetal Muscle Leg	muscle
8	chr11:56968200-56971600	Enhancers	Right Atrium	heart
9	chr11:56968200-56971600	Enhancers	Stomach Smooth Muscle	stomach
10	chr11:56968200-56973000	Enhancers	Left Ventricle	heart
11	chr11:56968200-56974400	Enhancers	Fetal Muscle Trunk	muscle
12	chr11:56968200-56975200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr11:56968400-56969000	Enhancers	Lung	lung
14	chr11:56968400-56969200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:56968600-56969200	Bivalent Enhancer	Adipose Nuclei	Adipose
16	chr11:56968600-56970000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
17	chr11:56968600-56972800	Enhancers	Spleen	Spleen
18	chr11:56968800-56969000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:56968800-56969000	Enhancers	Brain Anterior Caudate	brain
20	chr11:56968800-56969400	Enhancers	Colon Smooth Muscle	Colon
21	chr11:56968800-56969600	Weak transcription	Small Intestine	intestine
22	chr11:56968800-56969800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr11:56968800-56970000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
24	chr11:56968800-56972400	Enhancers	Right Ventricle	heart

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