Variant report

Variant	rs7125690
Chromosome Location	chr11:56042980-56042981
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:56042871-56043070	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
OR5T1	TF binding region

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11227518	1.00[CEU][hapmap]
rs11227762	0.84[AFR][1000 genomes]
rs11824850	0.84[AFR][1000 genomes]
rs12270268	1.00[CEU][hapmap]
rs12272629	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12274193	0.84[AFR][1000 genomes]
rs12277630	0.84[AFR][1000 genomes]
rs17530416	1.00[CEU][hapmap]
rs17530423	1.00[CEU][hapmap]
rs17531417	1.00[CEU][hapmap]
rs17541821	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17541876	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs17542961	1.00[CEU][hapmap]
rs17603260	1.00[CEU][hapmap]
rs17610726	1.00[CEU][hapmap]
rs17613345	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17614327	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap]
rs17627302	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1945237	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap]
rs1947923	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2170446	1.00[CEU][hapmap]
rs2512961	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs2870138	1.00[CEU][hapmap]
rs55706115	0.91[EUR][1000 genomes]
rs55892403	0.91[EUR][1000 genomes]
rs56077409	0.91[EUR][1000 genomes]
rs61888282	0.97[EUR][1000 genomes]
rs61888286	0.97[EUR][1000 genomes]
rs61888289	0.97[EUR][1000 genomes]
rs61888309	0.97[EUR][1000 genomes]
rs61888312	0.97[EUR][1000 genomes]
rs61888313	0.97[EUR][1000 genomes]
rs61901983	0.82[EUR][1000 genomes]
rs61902021	0.80[EUR][1000 genomes]
rs61902022	0.80[EUR][1000 genomes]
rs61902863	0.80[EUR][1000 genomes]
rs61903478	0.92[EUR][1000 genomes]
rs61903482	0.94[EUR][1000 genomes]
rs61903483	0.94[EUR][1000 genomes]
rs61903484	0.91[EUR][1000 genomes]
rs61903485	0.91[EUR][1000 genomes]
rs61903486	0.91[EUR][1000 genomes]
rs61903487	0.91[EUR][1000 genomes]
rs61903530	0.92[EUR][1000 genomes]
rs61903531	0.92[EUR][1000 genomes]
rs61903536	0.92[EUR][1000 genomes]
rs61903537	0.92[EUR][1000 genomes]
rs61903541	0.92[EUR][1000 genomes]
rs7103598	0.82[EUR][1000 genomes]
rs7106248	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7109807	0.90[CEU][hapmap]
rs7111634	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap]
rs7113176	0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7113418	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7119253	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7121384	0.91[EUR][1000 genomes]
rs7121385	0.91[EUR][1000 genomes]
rs7123108	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap]
rs7124023	0.91[EUR][1000 genomes]
rs7126549	0.80[EUR][1000 genomes]
rs716103	0.97[EUR][1000 genomes]
rs716104	0.97[EUR][1000 genomes]
rs7927015	0.90[CEU][hapmap]
rs7932621	0.97[EUR][1000 genomes]
rs7942730	1.00[CEU][hapmap]
rs7951134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7951506	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv521440	chr11:55763943-56052521	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv949437	chr11:55780469-56042980	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
6	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
7	esv3379598	chr11:56020228-56043618	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links