Variant report

Variant	rs7125829
Chromosome Location	chr11:17146889-17146890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17097847..17101589-chr11:17144029..17146932,3	K562	blood:
2	chr11:17138925..17141236-chr11:17145366..17148139,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1059640	0.85[AFR][1000 genomes]
rs11024147	0.92[YRI][hapmap]
rs11024186	1.00[YRI][hapmap]
rs12225195	1.00[YRI][hapmap]
rs214933	0.83[YRI][hapmap]
rs73435305	0.89[AMR][1000 genomes]
rs7924885	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928860	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7932756	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7935357	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945916	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17100400-17157200	Weak transcription	Fetal Heart	heart
2	chr11:17105400-17172800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:17106800-17156600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:17107000-17167200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:17107800-17147200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:17108200-17177400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:17108600-17172800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:17109400-17148400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:17109600-17147000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:17109800-17158400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:17111600-17182000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr11:17111800-17157800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr11:17115800-17154400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr11:17116800-17149800	Weak transcription	A549	lung
15	chr11:17117800-17147000	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:17117800-17151800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:17120400-17157800	Weak transcription	Stomach Mucosa	stomach
18	chr11:17120400-17181600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr11:17120600-17155800	Weak transcription	Esophagus	oesophagus
20	chr11:17120800-17156200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:17120800-17166200	Weak transcription	Pancreas	Pancrea
22	chr11:17120800-17171800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:17120800-17172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:17121000-17178000	Weak transcription	Psoas Muscle	Psoas
25	chr11:17125400-17172200	Weak transcription	Fetal Brain Male	brain
26	chr11:17125800-17181400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr11:17126000-17150000	Weak transcription	K562	blood
28	chr11:17126800-17149400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr11:17126800-17149800	Weak transcription	Brain Angular Gyrus	brain
30	chr11:17126800-17186400	Weak transcription	Colonic Mucosa	Colon
31	chr11:17127200-17149000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:17127400-17149400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:17129800-17147000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:17129800-17158200	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr11:17130200-17149800	Weak transcription	Ovary	ovary
36	chr11:17130200-17174600	Weak transcription	Spleen	Spleen
37	chr11:17130200-17203800	Weak transcription	Aorta	Aorta
38	chr11:17130800-17150200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:17132000-17149800	Weak transcription	Thymus	Thymus
40	chr11:17132000-17150000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:17132000-17167800	Weak transcription	Right Ventricle	heart
42	chr11:17132200-17155600	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:17132200-17156200	Weak transcription	HSMMtube	muscle
44	chr11:17132200-17163200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr11:17132400-17149400	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:17132400-17150000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:17132800-17154600	Weak transcription	Fetal Thymus	thymus
48	chr11:17133200-17149400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr11:17135000-17154200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr11:17135000-17155400	Weak transcription	GM12878-XiMat	blood

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