Variant report

Variant	rs7126283
Chromosome Location	chr11:17038932-17038933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17037168..17039319-chr11:17083342..17085313,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1059640	1.00[AMR][1000 genomes]
rs12281206	0.89[AMR][1000 genomes]
rs12294528	0.89[AMR][1000 genomes]
rs55853906	0.89[AMR][1000 genomes]
rs57681321	1.00[AMR][1000 genomes]
rs59763013	0.89[AMR][1000 genomes]
rs6486356	0.89[AMR][1000 genomes]
rs7928860	1.00[AMR][1000 genomes]
rs7939949	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv825771	chr11:17027229-17048360	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17036600-17041000	Weak transcription	HSMMtube	muscle
2	chr11:17036800-17041000	Weak transcription	HSMM	muscle
3	chr11:17037000-17042400	Weak transcription	Liver	Liver
4	chr11:17037000-17050200	Weak transcription	Adipose Nuclei	Adipose
5	chr11:17037200-17042800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:17037200-17043000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:17037200-17050400	Weak transcription	Brain Anterior Caudate	brain
8	chr11:17037200-17056000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:17037400-17044400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:17037600-17040400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:17037600-17042600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr11:17037600-17042800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:17037600-17046400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:17037600-17048400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:17037600-17049400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:17037600-17058400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:17037600-17058600	Weak transcription	Gastric	stomach
18	chr11:17037800-17040400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:17037800-17040400	Weak transcription	Fetal Intestine Large	intestine
20	chr11:17037800-17040400	Weak transcription	Fetal Intestine Small	intestine
21	chr11:17037800-17040600	Weak transcription	HepG2	liver
22	chr11:17037800-17044600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr11:17037800-17048200	Weak transcription	Stomach Mucosa	stomach
24	chr11:17037800-17057400	Weak transcription	Fetal Stomach	stomach
25	chr11:17037800-17057800	Weak transcription	Pancreas	Pancrea
26	chr11:17038000-17042400	Weak transcription	A549	lung
27	chr11:17038000-17043000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:17038800-17039000	Enhancers	Fetal Heart	heart
29	chr11:17038800-17046200	Weak transcription	H9 Cell Line	embryonic stem cell

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