Variant report

Variant	rs7127741
Chromosome Location	chr11:47074479-47074480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10501319	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10742797	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs10769225	0.90[CEU][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10769226	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10769227	0.91[CEU][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10769228	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10769248	0.82[ASN][1000 genomes]
rs10838635	0.82[CEU][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10838640	0.91[CEU][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838641	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10838644	0.90[CEU][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10838646	0.91[CEU][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838652	0.91[CEU][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10838658	0.84[CEU][hapmap];0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10838662	0.91[CEU][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838663	0.92[ASN][1000 genomes]
rs10838664	0.91[CEU][hapmap];0.88[ASN][1000 genomes]
rs11039028	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11039033	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11039035	0.82[ASN][1000 genomes]
rs11039057	0.85[ASN][1000 genomes]
rs11039080	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11039081	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11039098	0.84[ASN][1000 genomes]
rs11600292	0.90[CEU][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11601798	0.91[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11602250	0.91[CEU][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11603373	0.89[ASN][1000 genomes]
rs11608083	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12417519	0.91[CEU][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12574410	0.92[ASN][1000 genomes]
rs17790204	0.87[ASN][1000 genomes]
rs2087215	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2279438	0.84[CEU][hapmap];0.87[ASN][1000 genomes]
rs2279439	0.91[CEU][hapmap];0.89[ASN][1000 genomes]
rs34340483	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3758666	0.81[ASN][1000 genomes]
rs3758667	0.81[CEU][hapmap]
rs3922684	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4269876	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4315028	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4394802	0.91[CEU][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4494268	0.92[ASN][1000 genomes]
rs4498951	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4528282	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4548577	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4576779	0.95[ASN][1000 genomes]
rs4581406	0.91[CEU][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4587689	0.91[CEU][hapmap];0.80[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4752815	0.91[CEU][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4752816	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4752951	0.82[ASN][1000 genomes]
rs4752965	0.92[ASN][1000 genomes]
rs4752968	0.83[ASN][1000 genomes]
rs4752969	0.82[CEU][hapmap];0.92[ASN][1000 genomes]
rs61896133	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61896136	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61897787	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61897844	0.81[ASN][1000 genomes]
rs61897857	0.81[ASN][1000 genomes]
rs6485715	0.91[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6485716	0.87[ASN][1000 genomes]
rs6485726	0.91[CEU][hapmap];0.80[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108822	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7111270	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7112854	0.91[CEU][hapmap];0.80[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7113108	0.90[AFR][1000 genomes]
rs7114683	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123632	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7124648	0.91[CEU][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7126005	0.91[CEU][hapmap];0.80[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7128193	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7128650	0.91[CEU][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7130006	0.91[CEU][hapmap];0.85[ASN][1000 genomes]
rs7130947	0.91[CEU][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7929688	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7935346	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7937410	0.91[CEU][hapmap];0.88[ASN][1000 genomes]
rs7938169	0.91[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7939786	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7940240	0.91[CEU][hapmap];0.89[ASN][1000 genomes]
rs7945558	0.91[CEU][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7946739	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7950753	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7951979	0.88[ASN][1000 genomes]
rs901747	0.88[ASN][1000 genomes]
rs923324	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv508627	chr11:47052659-47084007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47053400-47077600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:47055400-47077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:47055600-47077800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:47058600-47074800	Weak transcription	Fetal Intestine Small	intestine
6	chr11:47061400-47082800	Weak transcription	Brain Angular Gyrus	brain
7	chr11:47064000-47077600	Weak transcription	Fetal Lung	lung
8	chr11:47065000-47079000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:47067000-47077200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:47068200-47079000	Weak transcription	Fetal Brain Male	brain
11	chr11:47068400-47092400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:47070200-47080000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:47070400-47079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:47071600-47089000	Weak transcription	Gastric	stomach
15	chr11:47072000-47075000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:47072200-47075400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:47072200-47080800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:47072200-47082000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr11:47072400-47079200	Weak transcription	Primary B cells from cord blood	blood
20	chr11:47072600-47093000	Weak transcription	Ovary	ovary
21	chr11:47072800-47074800	Enhancers	Colon Smooth Muscle	Colon
22	chr11:47072800-47075000	Enhancers	Stomach Smooth Muscle	stomach
23	chr11:47072800-47079000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:47072800-47079000	Weak transcription	Fetal Brain Female	brain
25	chr11:47072800-47081200	Weak transcription	Dnd41	blood
26	chr11:47072800-47082200	Weak transcription	A549	lung
27	chr11:47072800-47093000	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:47073000-47074600	Weak transcription	Brain Germinal Matrix	brain
29	chr11:47073000-47077200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:47073000-47077400	Weak transcription	NH-A	brain
31	chr11:47073000-47077400	Weak transcription	NHDF-Ad	bronchial
32	chr11:47073000-47077800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr11:47073200-47074800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:47073200-47074800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:47073200-47076000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:47073200-47076400	Weak transcription	Fetal Thymus	thymus
37	chr11:47073200-47077000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:47073200-47077400	Weak transcription	Fetal Stomach	stomach
39	chr11:47073200-47077400	Weak transcription	Osteobl	bone
40	chr11:47073200-47077600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:47073200-47077800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:47073200-47082600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr11:47073200-47092400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:47073600-47074600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:47073600-47074600	Enhancers	Rectal Smooth Muscle	rectum
46	chr11:47073600-47088600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr11:47073800-47074800	Enhancers	Fetal Heart	heart
48	chr11:47073800-47076800	Strong transcription	Cortex derived primary cultured neurospheres	brain
49	chr11:47073800-47077600	Weak transcription	Fetal Muscle Leg	muscle
50	chr11:47073800-47078200	Weak transcription	Primary B cells from peripheral blood	blood

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