Variant report

Variant	rs7128520
Chromosome Location	chr11:47076971-47076972
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47072188..47073841-chr11:47075251..47077094,2	K562	blood:

Variant related genes	Relation type
ENSG00000149179	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11039051	0.86[YRI][hapmap]
rs11039071	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288724	0.89[YRI][hapmap]
rs4647707	0.93[YRI][hapmap]
rs6485729	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485743	1.00[YRI][hapmap]
rs7106654	0.96[YRI][hapmap]
rs7930424	1.00[YRI][hapmap]
rs7949025	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043108	chr11:47041565-47117248	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv508627	chr11:47052659-47084007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47026800-47080200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:47053400-47077600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:47055400-47077200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:47055600-47077800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:47061400-47082800	Weak transcription	Brain Angular Gyrus	brain
6	chr11:47064000-47077600	Weak transcription	Fetal Lung	lung
7	chr11:47065000-47079000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:47067000-47077200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:47068200-47079000	Weak transcription	Fetal Brain Male	brain
10	chr11:47068400-47092400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:47070200-47080000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:47070400-47079000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:47071600-47089000	Weak transcription	Gastric	stomach
14	chr11:47072200-47080800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:47072200-47082000	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr11:47072400-47079200	Weak transcription	Primary B cells from cord blood	blood
17	chr11:47072600-47093000	Weak transcription	Ovary	ovary
18	chr11:47072800-47079000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:47072800-47079000	Weak transcription	Fetal Brain Female	brain
20	chr11:47072800-47081200	Weak transcription	Dnd41	blood
21	chr11:47072800-47082200	Weak transcription	A549	lung
22	chr11:47072800-47093000	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:47073000-47077200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:47073000-47077400	Weak transcription	NH-A	brain
25	chr11:47073000-47077400	Weak transcription	NHDF-Ad	bronchial
26	chr11:47073000-47077800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:47073200-47077000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr11:47073200-47077400	Weak transcription	Fetal Stomach	stomach
29	chr11:47073200-47077400	Weak transcription	Osteobl	bone
30	chr11:47073200-47077600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:47073200-47077800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:47073200-47082600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr11:47073200-47092400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:47073600-47088600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr11:47073800-47077600	Weak transcription	Fetal Muscle Leg	muscle
36	chr11:47073800-47078200	Weak transcription	Primary B cells from peripheral blood	blood
37	chr11:47073800-47083800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr11:47073800-47092200	Weak transcription	Placenta	Placenta
39	chr11:47073800-47100200	Weak transcription	Thymus	Thymus
40	chr11:47074000-47077400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:47074600-47077600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:47074600-47078400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:47074600-47082200	Weak transcription	Brain Substantia Nigra	brain
44	chr11:47074600-47082800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:47074800-47077200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:47074800-47077200	Weak transcription	Fetal Heart	heart
47	chr11:47074800-47077400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:47074800-47077600	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:47075000-47077400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:47075000-47080000	Weak transcription	Hela-S3	cervix

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