Variant report

Variant	rs7132443
Chromosome Location	chr12:51071258-51071259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51062193..51066616-chr12:51069507..51072136,4	K562	blood:
2	chr12:51070223..51073044-chr12:51074608..51077031,3	MCF-7	breast:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10506296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10735827	0.81[ASN][1000 genomes]
rs10747592	0.81[ASN][1000 genomes]
rs10783368	0.86[EUR][1000 genomes]
rs10783388	0.81[ASN][1000 genomes]
rs10876048	0.86[EUR][1000 genomes]
rs10876054	0.86[EUR][1000 genomes]
rs10876082	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876083	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876085	0.87[EUR][1000 genomes]
rs10876088	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10876091	0.87[EUR][1000 genomes]
rs11169551	0.85[ASN][1000 genomes]
rs11169553	0.95[EUR][1000 genomes]
rs11169556	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12099615	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12296379	0.90[EUR][1000 genomes]
rs12320201	0.86[EUR][1000 genomes]
rs13328926	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1402693	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1521515	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1521517	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1561422	0.81[ASN][1000 genomes]
rs17124888	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17124907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1815010	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1996750	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2246840	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2252595	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2684886	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2684890	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2684891	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2684902	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2684906	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2700486	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28414775	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28479152	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2947617	0.86[EUR][1000 genomes]
rs3803181	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3825401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4129355	0.86[EUR][1000 genomes]
rs4132432	0.82[AMR][1000 genomes]
rs4143663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4306347	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4517607	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4562889	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4768887	0.86[EUR][1000 genomes]
rs4768909	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4768915	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768920	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56753963	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs56818625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57328764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57512759	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58301497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58943330	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59194948	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59284993	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59683461	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60239257	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60494920	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60908906	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580766	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6580767	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6580768	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6580770	0.86[EUR][1000 genomes]
rs7131993	0.86[EUR][1000 genomes]
rs7135222	0.86[EUR][1000 genomes]
rs7301125	0.86[EUR][1000 genomes]
rs7302749	0.86[EUR][1000 genomes]
rs7303202	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7304793	0.86[EUR][1000 genomes]
rs7306387	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7308872	0.94[ASN][1000 genomes]
rs7310507	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7487645	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7953880	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7955310	0.86[EUR][1000 genomes]
rs7969251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7978443	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7979184	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7979474	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs829125	0.86[EUR][1000 genomes]
rs865490	0.90[EUR][1000 genomes]
rs939631	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs951591	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9634264	0.86[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51015600-51075800	Weak transcription	Colonic Mucosa	Colon
2	chr12:51028400-51092400	Weak transcription	Gastric	stomach
3	chr12:51041800-51091400	Weak transcription	Pancreas	Pancrea
4	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:51052200-51071600	Weak transcription	Osteobl	bone
6	chr12:51053000-51086200	Weak transcription	Psoas Muscle	Psoas
7	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr12:51053800-51089200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr12:51054600-51071600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr12:51056400-51079200	Weak transcription	HSMM	muscle
11	chr12:51056400-51079600	Weak transcription	Fetal Kidney	kidney
12	chr12:51056600-51079400	Weak transcription	Fetal Heart	heart
13	chr12:51057000-51089600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr12:51058600-51089000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr12:51059400-51089600	Weak transcription	Small Intestine	intestine
16	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
18	chr12:51060600-51071800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:51061200-51080200	Weak transcription	Right Ventricle	heart
20	chr12:51062200-51080400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr12:51062600-51091800	Strong transcription	Liver	Liver
22	chr12:51063000-51079600	Weak transcription	Brain Angular Gyrus	brain
23	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr12:51063600-51072800	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr12:51063800-51072800	Strong transcription	Fetal Intestine Large	intestine
28	chr12:51063800-51079800	Weak transcription	NHLF	lung
29	chr12:51063800-51085600	Strong transcription	Primary T cells from cord blood	blood
30	chr12:51064000-51073000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
32	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr12:51064600-51078800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr12:51064800-51078600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr12:51064800-51090000	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr12:51064800-51095800	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr12:51065200-51072800	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr12:51065200-51079400	Weak transcription	Aorta	Aorta
39	chr12:51065200-51081800	Weak transcription	Spleen	Spleen
40	chr12:51065800-51076800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr12:51066200-51080000	Weak transcription	Colon Smooth Muscle	Colon
42	chr12:51067000-51071400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr12:51067000-51071600	Weak transcription	NHDF-Ad	bronchial
44	chr12:51067200-51072600	Strong transcription	Fetal Muscle Leg	muscle
45	chr12:51067200-51072800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr12:51067200-51082600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr12:51067200-51084600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr12:51067200-51085400	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr12:51067400-51072800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr12:51067400-51076400	Strong transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links