Variant report

Variant	rs71327052
Chromosome Location	chr3:46378309-46378310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46377692..46380545-chr3:46391345..46393642,2	MCF-7	breast:

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs11574430	0.90[ASN][1000 genomes]
rs11574436	0.90[ASN][1000 genomes]
rs11574442	0.90[ASN][1000 genomes]
rs11575062	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919884	0.81[EUR][1000 genomes]
rs13065351	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13068145	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13068271	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13071469	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13073976	0.82[EUR][1000 genomes]
rs13077302	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13078564	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13080757	0.82[EUR][1000 genomes]
rs13093063	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13100243	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17141079	1.00[ASN][1000 genomes]
rs17141101	0.90[ASN][1000 genomes]
rs17217831	0.85[EUR][1000 genomes]
rs17283712	0.85[EUR][1000 genomes]
rs17284138	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17284187	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17285143	0.85[ASN][1000 genomes]
rs17715106	1.00[ASN][1000 genomes]
rs17765882	1.00[ASN][1000 genomes]
rs17782551	0.95[ASN][1000 genomes]
rs17782618	0.95[ASN][1000 genomes]
rs17782636	0.95[ASN][1000 genomes]
rs1894387	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894388	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2157055	0.85[ASN][1000 genomes]
rs2373245	0.85[ASN][1000 genomes]
rs2373250	0.85[ASN][1000 genomes]
rs2373251	0.85[ASN][1000 genomes]
rs2856762	1.00[ASN][1000 genomes]
rs28677778	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3091310	0.85[EUR][1000 genomes]
rs3092957	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3092958	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3092959	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181038	1.00[ASN][1000 genomes]
rs3204850	0.90[ASN][1000 genomes]
rs34024447	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34041956	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34073838	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34079287	0.85[EUR][1000 genomes]
rs34106161	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34158148	1.00[ASN][1000 genomes]
rs34180919	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34190223	1.00[ASN][1000 genomes]
rs34200951	0.95[ASN][1000 genomes]
rs34203322	0.87[ASN][1000 genomes]
rs34245951	0.85[ASN][1000 genomes]
rs34265215	0.85[ASN][1000 genomes]
rs34351442	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34363105	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34406035	0.82[EUR][1000 genomes]
rs34448949	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34455547	1.00[ASN][1000 genomes]
rs34473395	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34578126	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34671664	0.85[ASN][1000 genomes]
rs34709208	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34883716	1.00[ASN][1000 genomes]
rs34953706	1.00[ASN][1000 genomes]
rs34988015	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34997818	0.85[ASN][1000 genomes]
rs35035328	0.80[EUR][1000 genomes]
rs35117954	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35118578	0.86[ASN][1000 genomes]
rs35148665	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35203745	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35218998	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35260614	1.00[ASN][1000 genomes]
rs35367413	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35373513	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35386789	0.86[ASN][1000 genomes]
rs35413141	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35438577	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35479331	1.00[ASN][1000 genomes]
rs35511592	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35513549	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35516519	1.00[ASN][1000 genomes]
rs35568430	0.90[ASN][1000 genomes]
rs35577626	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35601704	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35646896	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35821444	1.00[ASN][1000 genomes]
rs35878193	0.95[ASN][1000 genomes]
rs35883833	0.85[ASN][1000 genomes]
rs35943069	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36020695	0.85[ASN][1000 genomes]
rs36030692	0.85[ASN][1000 genomes]
rs36048333	0.82[EUR][1000 genomes]
rs36052732	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36078103	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3749461	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918354	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918362	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918365	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3918368	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4473594	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4987053	0.83[EUR][1000 genomes]
rs6777875	1.00[ASN][1000 genomes]
rs6793370	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6806951	0.95[ASN][1000 genomes]
rs71327047	0.88[EUR][1000 genomes]
rs71327048	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71327053	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327054	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327055	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327056	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327057	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71327059	1.00[ASN][1000 genomes]
rs71327061	1.00[ASN][1000 genomes]
rs71327062	0.95[ASN][1000 genomes]
rs71327063	0.85[ASN][1000 genomes]
rs71615445	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71622511	0.83[EUR][1000 genomes]
rs7649905	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9714000	0.82[ASN][1000 genomes]
rs9810242	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9872023	0.88[EUR][1000 genomes]
rs9882616	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46376000-46380000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr3:46377400-46379400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:46377600-46379000	Weak transcription	HMEC	breast
4	chr3:46377600-46379000	Weak transcription	NHEK	skin
5	chr3:46377600-46379200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:46377600-46379200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:46378000-46378400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:46378000-46378400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:46378000-46378600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:46378000-46378600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:46378000-46378800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr3:46378200-46378600	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:46378200-46378600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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