Variant report

Variant	rs7134045
Chromosome Location	chr12:86757305-86757306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10160933	1.00[JPT][hapmap]
rs10776953	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10776954	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10776958	0.95[EUR][1000 genomes]
rs10776960	0.91[EUR][1000 genomes]
rs10776966	0.92[ASW][hapmap]
rs10776967	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10776975	0.82[CEU][hapmap]
rs10776982	0.87[CHD][hapmap]
rs10858409	0.89[EUR][1000 genomes]
rs10858411	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs10858412	0.94[CEU][hapmap];0.96[TSI][hapmap]
rs10858417	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10858420	0.88[CEU][hapmap];0.96[EUR][1000 genomes]
rs11103880	1.00[JPT][hapmap]
rs11103946	0.94[EUR][1000 genomes]
rs12306070	1.00[JPT][hapmap]
rs12309228	1.00[JPT][hapmap]
rs12311272	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs12311407	1.00[JPT][hapmap]
rs12311449	0.88[CHD][hapmap];1.00[JPT][hapmap]
rs13378062	1.00[JPT][hapmap]
rs1389292	0.83[EUR][1000 genomes]
rs1389294	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1389295	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1463749	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1493408	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs1493413	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1493414	0.82[CEU][hapmap];0.95[EUR][1000 genomes]
rs1493416	0.88[ASN][1000 genomes]
rs1493417	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1493418	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1493419	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs1493420	0.84[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1493421	1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes]
rs1532262	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1532263	0.87[EUR][1000 genomes]
rs1542780	1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap]
rs1552839	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1602850	0.88[ASN][1000 genomes]
rs1628799	0.85[TSI][hapmap]
rs1994863	0.84[EUR][1000 genomes]
rs2131565	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2141925	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs2178748	0.81[CEU][hapmap];1.00[TSI][hapmap]
rs2201281	1.00[JPT][hapmap]
rs2250915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2405797	0.94[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2405932	0.88[CEU][hapmap]
rs2405934	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs2406120	0.95[EUR][1000 genomes]
rs2406121	0.95[EUR][1000 genomes]
rs2406128	0.94[CEU][hapmap]
rs2406142	0.84[MEX][hapmap]
rs2452803	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2452805	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2452806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2452808	0.82[CEU][hapmap];0.94[EUR][1000 genomes]
rs2452811	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2452815	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2465142	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2465145	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2465146	0.88[ASN][1000 genomes]
rs2465148	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2465149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2471561	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2471562	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2471563	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2471564	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2471567	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2897269	0.82[CEU][hapmap]
rs2897273	0.96[TSI][hapmap]
rs4280066	0.87[CHD][hapmap]
rs4329741	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4444151	0.82[CEU][hapmap]
rs6538027	0.82[CEU][hapmap]
rs6538040	0.82[CEU][hapmap]
rs7134944	0.88[CEU][hapmap];1.00[TSI][hapmap]
rs7137308	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7302391	0.84[MEX][hapmap]
rs7303642	0.95[EUR][1000 genomes]
rs7309839	0.82[CEU][hapmap]
rs7312245	0.82[CEU][hapmap]
rs7953494	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7954833	0.88[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs7963957	0.89[EUR][1000 genomes]
rs7966656	0.95[EUR][1000 genomes]
rs7972185	0.88[CEU][hapmap];1.00[TSI][hapmap]
rs7975314	0.82[CEU][hapmap];1.00[TSI][hapmap]
rs839107	0.86[EUR][1000 genomes]
rs839114	0.81[TSI][hapmap]
rs839162	0.85[TSI][hapmap]
rs844434	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1053234	chr12:86701070-86774957	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1041126	chr12:86736601-86774957	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv1051494	chr12:86736601-86776021	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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