Variant report

Variant	rs7135080
Chromosome Location	chr12:63097969-63097970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63032737..63035703-chr12:63097424..63099725,2	MCF-7	breast:
2	chr12:63097942..63100132-chr12:63116970..63118989,2	MCF-7	breast:
3	chr12:63092260..63094911-chr12:63095834..63100024,3	MCF-7	breast:
4	chr12:62996063..62998994-chr12:63094952..63099906,5	MCF-7	breast:
5	chr12:63097572..63099203-chr12:63101470..63104150,2	MCF-7	breast:
6	chr12:63097728..63100146-chr12:63104494..63106839,2	MCF-7	breast:
7	chr12:63039398..63042181-chr12:63096184..63099134,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257354	Chromatin interaction
ENSG00000199179	Chromatin interaction
ENSG00000221949	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10877911	0.81[CHB][hapmap]
rs11174616	0.82[JPT][hapmap]
rs11174620	1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11174621	0.87[CEU][hapmap];0.87[CHB][hapmap]
rs11174626	0.81[CHB][hapmap]
rs13313182	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17677566	0.85[CEU][hapmap]
rs17733673	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs17733713	0.92[EUR][1000 genomes]
rs17733777	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2270484	0.83[CHB][hapmap]
rs57163227	0.82[EUR][1000 genomes]
rs57941935	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61919551	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7136083	0.82[JPT][hapmap]
rs7308302	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs7312352	0.81[CHB][hapmap]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63067400-63116800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:63068800-63102800	Weak transcription	Right Ventricle	heart
3	chr12:63078000-63118600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr12:63083800-63103000	Weak transcription	Gastric	stomach
5	chr12:63087200-63113600	Weak transcription	Liver	Liver
6	chr12:63090800-63099000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr12:63091000-63099400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:63093600-63098600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:63094200-63098600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:63094800-63098400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr12:63095000-63098000	Enhancers	Brain Anterior Caudate	brain
12	chr12:63095000-63098200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:63095000-63098200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:63095000-63098200	Enhancers	Brain Hippocampus Middle	brain
15	chr12:63095000-63098200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr12:63095000-63098200	Enhancers	Brain Substantia Nigra	brain
17	chr12:63095000-63098800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr12:63095000-63100200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr12:63095200-63098200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr12:63095200-63098200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr12:63095200-63098400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr12:63095400-63098000	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr12:63095400-63098000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr12:63095400-63098800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr12:63095400-63098800	Enhancers	NHLF	lung
26	chr12:63095400-63099200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr12:63095600-63098200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr12:63095600-63098600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr12:63095600-63098800	Enhancers	HMEC	breast
30	chr12:63095600-63099200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:63096000-63098200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr12:63096000-63098200	Enhancers	Adipose Nuclei	Adipose
33	chr12:63096000-63098600	Enhancers	Fetal Muscle Leg	muscle
34	chr12:63096000-63098600	Enhancers	Placenta	Placenta
35	chr12:63096000-63098600	Enhancers	Stomach Smooth Muscle	stomach
36	chr12:63096200-63098200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr12:63096200-63098400	Enhancers	HSMM	muscle
38	chr12:63096200-63098600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr12:63096200-63099000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr12:63096200-63099000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr12:63096400-63098200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr12:63096400-63098400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr12:63096400-63098600	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr12:63096400-63098600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr12:63096400-63098600	Enhancers	Fetal Stomach	stomach
46	chr12:63096400-63098800	Enhancers	Primary hematopoietic stem cells short term culture	blood
47	chr12:63096400-63101800	Enhancers	Fetal Thymus	thymus
48	chr12:63096600-63098200	Enhancers	Fetal Muscle Trunk	muscle
49	chr12:63096600-63098600	Enhancers	Lung	lung
50	chr12:63096600-63098800	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links